PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G002200.1

Common Name

B456_009G002200, LOC105771321

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 238aa MW: 26983.6 Da PI: 4.3126

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G002200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.3	1.5e-14	62	105	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr l+P+ +K++Ka+i + A++YI++Lq Gorai.009G002200.1 62 LSERNRRKKLNQRLFALRALVPNI-----TKMDKASIIKDAIDYIQQLQ 105 57*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.342	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-18	58	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.92E-15	58	109	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-17	60	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-12	61	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.0E-17	61	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MLWMENMENV SEEYNQNIWE PNYVFENEEY SWAMDELYDN DCSSSPDGAP ASASLSNSNN 60 ILSERNRRKK LNQRLFALRA LVPNITKMDK ASIIKDAIDY IQQLQEQEAT LQADIMELEN 120 NNNNNPKNHD LPMLLTSKNT SVFDSPIQLL QLNVTPMGDN TLLVSITCTK RADTMLKLCQ 180 LFESLNLKII TANLTVVSAN LFNTLFIRAD EKEKEELKMQ IQTAIAAFNG PQTPITI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5gnj_A	8e-15	59	120	8	69	Transcription factor MYC2
5gnj_B	8e-15	59	120	8	69	Transcription factor MYC2
5gnj_E	8e-15	59	120	8	69	Transcription factor MYC2
5gnj_F	8e-15	59	120	8	69	Transcription factor MYC2
5gnj_G	8e-15	59	120	8	69	Transcription factor MYC2
5gnj_I	8e-15	59	120	8	69	Transcription factor MYC2
5gnj_M	8e-15	59	120	8	69	Transcription factor MYC2
5gnj_N	8e-15	59	120	8	69	Transcription factor MYC2
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615047	8e-43	JX615047.1 Gossypium hirsutum clone NBRI_GE58830 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448201.1	1e-173	PREDICTED: transcription factor bHLH35-like isoform X2
Swissprot	Q2HIV9	2e-75	BH035_ARATH; Transcription factor bHLH35
TrEMBL	A0A0D2UDL7	1e-172	A0A0D2UDL7_GOSRA; Uncharacterized protein
STRING	Gorai.009G002200.1	1e-173	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24921	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	8e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G002200.1
Entrez Gene	105771321

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]