PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G282400.2 | ||||||||
Common Name | B456_008G282400, LOC105765590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 27064.1 Da PI: 9.4212 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.6 | 1.1e-13 | 69 | 119 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h e+Er+RR+++ s ++ Lr+llP ++K s ++ +Av+YIk+L+ Gorai.008G282400.2 69 KLHREIERQRRQDMASLYASLRSLLPGeY---IKGKRSMSDHMNEAVNYIKHLE 119 67*************************77...********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.418 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.51E-12 | 66 | 123 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-14 | 67 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-11 | 69 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-11 | 70 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.3E-6 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MLPLHQSDDL VYQIFSHTKQ HKIPQDPITG HTVVVESNPI ISNPTVKNRG RKICHMEGGA 60 GSDKYKKQKL HREIERQRRQ DMASLYASLR SLLPGEYIKG KRSMSDHMNE AVNYIKHLEK 120 KVKDLDAKRH ELKRVSDLAS VGSRTKPAAA SISNHCFIIR PCLIGIEIMF RCGVEDQDLS 180 LSRVLAVLVD EGLHVVSCFS TKSEEFLFHT IQTEVNDPTS VNISRLQQKL PQSSEVTKN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012440233.1 | 1e-178 | PREDICTED: transcription factor bHLH118 | ||||
TrEMBL | A0A0D2T8G4 | 1e-177 | A0A0D2T8G4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G282400.1 | 1e-174 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12540.1 | 1e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G282400.2 |
Entrez Gene | 105765590 |
Publications ? help Back to Top | |||
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