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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G282300.1 | ||||||||
Common Name | B456_008G282300, LOC105762556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 25791.1 Da PI: 5.1416 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.6e-11 | 60 | 112 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr llP +++K ++ +v YIk+Lq Gorai.008G282300.1 60 KKLMHRDVERQRRQEMATLYASLRNLLPLeY---TKGKRAISDHMNGTVMYIKYLQ 112 5789*************************77...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.84E-13 | 56 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.60E-10 | 58 | 116 | No hit | No description |
PROSITE profile | PS50888 | 12.455 | 59 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-8 | 60 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-10 | 60 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDELFLFQFP SIPNPQNETP QDKVLDYVVP MDGSGNTHLY SSMGSGATGN DDDDDNGEKK 60 KLMHRDVERQ RRQEMATLYA SLRNLLPLEY TKGKRAISDH MNGTVMYIKY LQKRVSELSY 120 KRDELKKVLN STGFDHGMSS DGAVLSTAVV HQSLDGGVEV VISTGFGARA LTLSRVLELL 180 VQEGLDVVSC VSTRINGGLA HTIQSEVTDL TLVDVPRLEQ KLSEEISSLN RIS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX618280 | 1e-136 | JX618280.1 Gossypium hirsutum clone NBRI_GE63693 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435765.1 | 1e-171 | PREDICTED: transcription factor bHLH120-like isoform X1 | ||||
Swissprot | Q9STJ6 | 2e-43 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | A0A0D2Q3D9 | 1e-170 | A0A0D2Q3D9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G282300.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 3e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G282300.1 |
Entrez Gene | 105762556 |
Publications ? help Back to Top | |||
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