PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G280400.1
Common NameB456_008G280400, LOC105762554
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 138aa    MW: 15547.8 Da    PI: 9.0105
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G280400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.8e-3951041100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaC++lrr+C++ C+++pyfp ++p++f  +h+++Gasnv kll++lp + r++a++sl+ eA+ r++dPvyG+vg+i+ lqqq++ ++
  Gorai.008G280400.1   5 RCAACRYLRRRCPPACIFSPYFPPNNPQRFVSIHRIYGASNVAKLLQQLPSHLRTQAADSLYLEAQYRIEDPVYGCVGLISLLQQQIHDVE 95 
                         6****************************************************************************************** PP

              DUF260  92 aelallkee 100
                          +la++++e
  Gorai.008G280400.1  96 RQLAMTQAE 104
                         ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.2924105IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-395102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MNPGRCAACR YLRRRCPPAC IFSPYFPPNN PQRFVSIHRI YGASNVAKLL QQLPSHLRTQ  60
AADSLYLEAQ YRIEDPVYGC VGLISLLQQQ IHDVERQLAM TQAEIAFRAR HPQAVESNLL  120
NNVGNPSFSN QASSWFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-40610512111LOB family transfactor Ramosa2.1
5ly0_B2e-40610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435764.12e-98PREDICTED: LOB domain-containing protein 24-like
SwissprotP594681e-50LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0D2RNU95e-97A0A0D2RNU9_GOSRA; Uncharacterized protein
STRINGGorai.008G280400.18e-98(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.17e-40LOB domain-containing protein 24
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]