PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G275600.4

Common Name

B456_008G275600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 639aa MW: 70995 Da PI: 7.1805

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G275600.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.2e-05	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Gorai.008G275600.4 77 KCDKCSREFCSPINYRRHIRVH 98 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0098	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.118	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence Send to blast
MPVAKLKAAN SANLMKSEDL NDSLDTFIRQ AIGKEPFLPF SRTGDSPVQW IQLLHALDQQ 60 DIPGWPLLSP LKVQAQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRDLLAAFWD 120 KLSEDEAKEV VSFKDVLLEG VPGSSVIKSL TTHVKRQGFS ALPQVCLRAG SALLDLVQAR 180 PSIFPISSQE LFSILDDASE RTFLCGAAVS MQKYIFDGEA GKIGLETKNL VACTSFLVEQ 240 KLVKEWLADK DAEALRCQKL LVEEEEAAQK RQVELLERKR QKKLRQKEQK AKEQRHWELE 300 ESKPNMDDLL EVNTLAETSS PSAVDSDGQN PLMSTDQIIP SVEPNLFSKL EENVDYEIQT 360 GFSNGYSDPG ISQNIERRTE QVGHRHIVVA RRQTPPNSQR GVLNDFHASQ NSHGFKCGGI 420 NKHGTNRERF APIGNGNKIW SQKPKAVNEG ESLKIRMEKQ AANQLNQNKN HELLIGSISV 480 TLENYSNHDG NNLAEACDRS LAECRIPKNN VQEKSSKLDP VQGVTNRSTI KFWRPVSRHE 540 SKSSSPVQNG ASESEVQVIA EKDGARTSSN ETCLRSCSTD GIDGVVSMDL ISTLKESVQP 600 ESSQFDSHTA KAILAQSKSG CLNDLSNNSI STVLLLPN*

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence Send to blast

MPVAKLKAAN SANLMKSEDL NDSLDTFIRQ AIGKEPFLPF SRTGDSPVQW IQLLHALDQQ  60
DIPGWPLLSP LKVQAQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRDLLAAFWD  120
KLSEDEAKEV VSFKDVLLEG VPGSSVIKSL TTHVKRQGFS ALPQVCLRAG SALLDLVQAR  180
PSIFPISSQE LFSILDDASE RTFLCGAAVS MQKYIFDGEA GKIGLETKNL VACTSFLVEQ  240
KLVKEWLADK DAEALRCQKL LVEEEEAAQK RQVELLERKR QKKLRQKEQK AKEQRHWELE  300
ESKPNMDDLL EVNTLAETSS PSAVDSDGQN PLMSTDQIIP SVEPNLFSKL EENVDYEIQT  360
GFSNGYSDPG ISQNIERRTE QVGHRHIVVA RRQTPPNSQR GVLNDFHASQ NSHGFKCGGI  420
NKHGTNRERF APIGNGNKIW SQKPKAVNEG ESLKIRMEKQ AANQLNQNKN HELLIGSISV  480
TLENYSNHDG NNLAEACDRS LAECRIPKNN VQEKSSKLDP VQGVTNRSTI KFWRPVSRHE  540
SKSSSPVQNG ASESEVQVIA EKDGARTSSN ETCLRSCSTD GIDGVVSMDL ISTLKESVQP  600
ESSQFDSHTA KAILAQSKSG CLNDLSNNSI STVLLLPN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	ERKRQKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440133.1	0.0	PREDICTED: uncharacterized protein LOC105765523 isoform X1
TrEMBL	A0A0D2RNH7	0.0	A0A0D2RNH7_GOSRA; Uncharacterized protein
STRING	Gorai.008G275600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-135	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Gorai.008G275600.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]