PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G261800.1
Common NameB456_008G261800, LOC105765379
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 307aa    MW: 33109.1 Da    PI: 5.7312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G261800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-192373256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a++ a+++l+g+
  Gorai.008G261800.1 23 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRGA 73
                        689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.6E-292380IPR001471AP2/ERF domain
CDDcd000183.28E-212380No hitNo description
PfamPF008472.7E-132372IPR001471AP2/ERF domain
PROSITE profilePS5103220.6792380IPR001471AP2/ERF domain
SMARTSM003805.8E-352386IPR001471AP2/ERF domain
PRINTSPR003674.9E-82435IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-202480IPR016177DNA-binding domain
PRINTSPR003674.9E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSVPIRADVV GGKKKSSSRG HHRFVGVRQR PSGRWVAEIK DSLQKVRLWL GTFDTAEEAA  60
RAYDDAARAL RGANARTNFE LPGPQLASSS STNRFSFDKL QPFSFEEACG KGGSDDGDGF  120
IGALKAKLLD GKGLKVLSLA NPAVVPPPQR IGNMNLVQGP TSKPDRERDG EVAVGHIEAQ  180
WHQPVQSQTP SMTSMIWSNE PSFEAATWGA QMNQVPPNGL FDISTLTAAT STWPLPGTAV  240
STMDLSFPNR CQIEFPVNMP ISQIDGTTTE GVWSSEQQFL QCDNNTLSGP IGSWGDPYLY  300
VSSVLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1521791271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439891.10.0PREDICTED: uncharacterized protein LOC105765379
TrEMBLA0A0D2T7810.0A0A0D2T781_GOSRA; Uncharacterized protein
STRINGGorai.008G261800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15994813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-19related to AP2 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]