PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G261400.2

Common Name

B456_008G261400, LOC105765373

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 791aa MW: 87037.6 Da PI: 4.668

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G261400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.5	6.2e-54	9	135	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd Gorai.008G261400.2 9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-EVIPEIDVCKWEPWDLPglSVIKSDDLEWFFFCPRDRKYPNGHRSNRATDKGYWKATGKD 98 699**********************999.99***********6447778888***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++++s k++l+g+kktLvfykgrapkge+t+W+mheyr Gorai.008G261400.2 99 RTIKS-KKSLIGMKKTLVFYKGRAPKGERTNWIMHEYR 135 *.899**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-62	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	57.838	9	159	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	10	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MEVLTMGTLP LGFRFRPTDE ELINHYLRLK INGRHSEVEV IPEIDVCKWE PWDLPGLSVI 60 KSDDLEWFFF CPRDRKYPNG HRSNRATDKG YWKATGKDRT IKSKKSLIGM KKTLVFYKGR 120 APKGERTNWI MHEYRPTTKE LDGTAPGQSA FVLCRLFHKV EGRNDIVKYD EVEQTGYSPA 180 MIKSSPDDTS SDLLQDTVSS DTQAQKPDNL MQNDQITGDT SSCNSHMTSN ADYHATEETM 240 MEKYPLPGSN SNLYEPNYGE IDSKVFSPLM NSQLFEDLPF FVDSPYANDF GHDQNGFHFQ 300 DGTSEQDVSF AFLDDILSNH YDSCEESNTQ KNLVDGTEMP LFGDSFISKT PPPEISYLKE 360 NGRPADTDTE MPQLQFGTEV GARRWLGGPI DNNQSLQMQT SFQPTHTQPA LYNQEYRTRN 420 IGGLGNYSVG QVTFTDSAMG NINNLQQLTS LKNYVNSGGD LGGGIGMKTG TCQPLKQSNS 480 ENFGTLGTGI KIRTRGSQQQ PNSDIVNQGT APRRIRLMKL SSGPMKGSVG CVDDEKMMST 540 CLVEEEEVQS ALTEVTEAEA AEQTSSSDES EKNIVNQGTA PRRIRLQTKL STGAMKGSAG 600 CDNGGNMTSP GLVEEEVQSA LTEVTEAEAA GQTSSSDESE KNIVNQAIAP RRIRLQLSTG 660 PMNGSAGCVD GGNMTSPGLG KEEVQSALTE ATEDEATGQI SSSCETSSSD ESEVENRFLK 720 FEGSRDADES YSKPRLRVKQ VDEQHSCSQK GPSLHLKAAP ALHRPNSLLV PGIAIFTITL 780 LFALFMGIWL *

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MEVLTMGTLP LGFRFRPTDE ELINHYLRLK INGRHSEVEV IPEIDVCKWE PWDLPGLSVI  60
KSDDLEWFFF CPRDRKYPNG HRSNRATDKG YWKATGKDRT IKSKKSLIGM KKTLVFYKGR  120
APKGERTNWI MHEYRPTTKE LDGTAPGQSA FVLCRLFHKV EGRNDIVKYD EVEQTGYSPA  180
MIKSSPDDTS SDLLQDTVSS DTQAQKPDNL MQNDQITGDT SSCNSHMTSN ADYHATEETM  240
MEKYPLPGSN SNLYEPNYGE IDSKVFSPLM NSQLFEDLPF FVDSPYANDF GHDQNGFHFQ  300
DGTSEQDVSF AFLDDILSNH YDSCEESNTQ KNLVDGTEMP LFGDSFISKT PPPEISYLKE  360
NGRPADTDTE MPQLQFGTEV GARRWLGGPI DNNQSLQMQT SFQPTHTQPA LYNQEYRTRN  420
IGGLGNYSVG QVTFTDSAMG NINNLQQLTS LKNYVNSGGD LGGGIGMKTG TCQPLKQSNS  480
ENFGTLGTGI KIRTRGSQQQ PNSDIVNQGT APRRIRLMKL SSGPMKGSVG CVDDEKMMST  540
CLVEEEEVQS ALTEVTEAEA AEQTSSSDES EKNIVNQGTA PRRIRLQTKL STGAMKGSAG  600
CDNGGNMTSP GLVEEEVQSA LTEVTEAEAA GQTSSSDESE KNIVNQAIAP RRIRLQLSTG  660
PMNGSAGCVD GGNMTSPGLG KEEVQSALTE ATEDEATGQI SSSCETSSSD ESEVENRFLK  720
FEGSRDADES YSKPRLRVKQ VDEQHSCSQK GPSLHLKAAP ALHRPNSLLV PGIAIFTITL  780
LFALFMGIWL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-46	9	159	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439881.1	0.0	PREDICTED: protein NTM1-like 9 isoform X4
TrEMBL	A0A0D2Q230	0.0	A0A0D2Q230_GOSRA; Uncharacterized protein
STRING	Gorai.008G261400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	1e-135	NAC 014

Link Out ? help Back to Top
Phytozome	Gorai.008G261400.2
Entrez Gene	105765373

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]