PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G259000.1
Common NameB456_008G259000, LOC105765352
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 476aa    MW: 53029.7 Da    PI: 6.8041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G259000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13300345454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  Gorai.008G259000.1 300 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLSDAVAYIKEL 345
                         799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-4920202IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.11E-18293360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.74E-15295349No hitNo description
PROSITE profilePS5088817.631296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-11300345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17300356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-16302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSSSSSSSLI TLGQDASPTL QQRLHFIVQS RPEWWVYSIF WQASRDVDGR VVLSWGDGYF  60
RGTRDGTGKS INRLSPSKLG SSFERKRSGK DQVQAYFNEV MDVDRMVDGD VTDYEWYYTV  120
SMTRSFAVGD GILGKAFGSG SHIWLGGDHE LQLYQCERVR EARMRGIQTL VCLPTSFGVV  180
ELGSSDIIME DWGTLQLTKS IFSSGINNSL GSNQPAHDSQ PQISTPSIPF VDFGMVSGDQ  240
KERILEEKQQ VEPKKETTGL GRSSSESDGD FASADTEFNA GGRSKKRGRK PGNGKESPIN  300
HVEAERQRRE RLNHRFYALR SVVPNVSKMD KASLLSDAVA YIKELRSKID KLEAQLLVQS  360
EKSKLNPINV FENQTTKSAF DNTMKQSSTY WPKTVEVDVK IVGSEAMIRV RSPDIDHPAA  420
RLMDALRDLE LPVHHASVSN VNDLMLQDVV VRVPTGIFIT DEMLSTAILQ RCTLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-29192038193Transcription factor MYC3
4rqw_B1e-29192038193Transcription factor MYC3
4rru_A2e-291918847217Transcription factor MYC3
4rs9_A1e-29192038193Transcription factor MYC3
4ywc_A2e-291918847217Transcription factor MYC3
4ywc_B2e-291918847217Transcription factor MYC3
4yz6_A1e-29192038193Transcription factor MYC3
5t0f_A2e-29191888178Transcription factor MYC3
5t0q_A2e-29191888178Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0727440.0KP072744.1 Gossypium hirsutum bHLH transcription factor PGF_D12 gene, complete cds.
GenBankKP0727460.0KP072746.1 Gossypium barbadense bHLH transcription factor PGF_D12 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439845.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A0D2Q1W80.0A0A0D2Q1W8_GOSRA; Uncharacterized protein
STRINGGorai.008G259000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-61bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]