PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 344aa MW: 38226.3 Da PI: 5.0001

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G252300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.9	2.9e-19	126	176	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g Gorai.008G252300.1 126 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 176 59******.******72....45***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.41E-32	126	183	No hit	No description
PROSITE profile	PS51032	23.578	127	184	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.7E-30	127	184	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-38	127	190	IPR001471	AP2/ERF domain
Pfam	PF00847	2.1E-12	127	176	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-21	127	184	IPR016177	DNA-binding domain
PRINTS	PR00367	3.7E-10	128	139	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-10	150	166	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDTCPVPSIK YAEHRNETKL FSPLLNVRLE NQPEMKPRIV RITVTDADAT DSSSDEEHQQ 60 KRTRVSSRNR VKKFVKEITI ESSCPTEKNI VERSKTTSSL SKASRKRPAA VAEAKGKAPA 120 KAPAGKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDNA AIQLRGPDAL 180 TNFTTPQQKS IQEKTSQKPL SNSDYNSDEE SHKTDPCSPT SVLRCHSLSV DEADSQSAKE 240 SREIGSEARD VVDDSCCLSG ENLSGFSDYS SLFSGDMFCS VPDFFDDDTS LHESFLKDEF 300 GDGFLSTCGD FEFGFGDFSS FQRVDDHFQD IGDLFGSDPL LAI*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDTCPVPSIK YAEHRNETKL FSPLLNVRLE NQPEMKPRIV RITVTDADAT DSSSDEEHQQ  60
KRTRVSSRNR VKKFVKEITI ESSCPTEKNI VERSKTTSSL SKASRKRPAA VAEAKGKAPA  120
KAPAGKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDNA AIQLRGPDAL  180
TNFTTPQQKS IQEKTSQKPL SNSDYNSDEE SHKTDPCSPT SVLRCHSLSV DEADSQSAKE  240
SREIGSEARD VVDDSCCLSG ENLSGFSDYS SLFSGDMFCS VPDFFDDDTS LHESFLKDEF  300
GDGFLSTCGD FEFGFGDFSS FQRVDDHFQD IGDLFGSDPL LAI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-20	125	183	3	62	ATERF1
3gcc_A	2e-20	125	183	3	62	ATERF1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439752.1	0.0	PREDICTED: ethylene-responsive transcription factor CRF1
TrEMBL	A0A0D2T6R3	0.0	A0A0D2T6R3_GOSRA; Uncharacterized protein
STRING	Gorai.008G252300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23750.2	2e-53	cytokinin response factor 2

Link Out ? help Back to Top
Phytozome	Gorai.008G252300.1
Entrez Gene	105765286

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]