PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G244400.2
Common NameB456_008G244400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 305aa    MW: 33926.1 Da    PI: 5.6546
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G244400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind78.31.2e-24211052102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d+++++lisw+e+g++f+v+++ efa+++Lp+yFkh+nf+SF       gF+k+  ++         weF++  F++g+ke
  Gorai.008G244400.2  21 FLAKTYQLVDDPSVDDLISWNEDGSAFIVWHPAEFARDLLPRYFKHNNFSSF-------GFRKIVPDR---------WEFANACFRRGEKE 95 
                         9**************************************************9.......9*****999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Gorai.008G244400.2  96 LLRDIHRRKI 105
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-4417103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.3E-2718103IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.26E-2718103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-122144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-2121103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-125971IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MACGSTASAA ADSQRSLPTP FLAKTYQLVD DPSVDDLISW NEDGSAFIVW HPAEFARDLL  60
PRYFKHNNFS SFGFRKIVPD RWEFANACFR RGEKELLRDI HRRKISPPAA TPATVTVAVV  120
PCEVSPTNSG DEQVISSHSP PVATILHRMT SCTTTPELLE ENERLRRENM QLSQELTQLK  180
GLCNNILTLM TNHASGQLES HSILAEGKAL DLLSARDSAR STEDSGSKEV AEEEDVTPKL  240
FGVSIGVKRL RKEGEDEMQN SFQVRQQDTE PASKMKEEPW MGKVMIKNRG SWSLVNDQTT  300
HNAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-192110620123Heat shock factor protein 1
5d5u_B7e-192110329129Heat shock factor protein 1
5d5v_B7e-192110329129Heat shock factor protein 1
5d5v_D7e-192110329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674070.0KR067407.1 Gossypium hirsutum HSF26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314454.10.0heat stress transcription factor B-2b-like
SwissprotQ9T0D38e-90HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0D2U9210.0A0A0D2U921_GOSRA; Uncharacterized protein
STRINGGorai.008G244400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.16e-81HSF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]