PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G243900.1
Common NameB456_008G243900, LOC105765192
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 671aa    MW: 74746.2 Da    PI: 6.3085
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G243900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4256.1e-1302886551374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++c+ea+ s++ +++++++a+l +lasp+g+++ Rl+ay+teAL  r++r +++++++ +p+e + +  +++ +al+l+++vsPi+
  Gorai.008G243900.1 288 LIHLLTACVEAIGSKNIAAINHYIAKLGDLASPRGSAISRLTAYYTEALTLRVTRLWPHIFHITTPRELD-RVDDDNGTALRLLNQVSPIP 377
                         689****************************************************************998.5678888999********** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++R+Tg+g+    sk+el+ tg+rL+ fAe+l++pfef++ v
  Gorai.008G243900.1 378 KFFHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRANPPSHVRVTGIGE----SKQELNDTGDRLSGFAEALNLPFEFHP-V 463
                         **********************************************************....***************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         ++rled++l++L+vk++E++aVn+v+qlh++l +    +   +++L l++s++P vvv++eqea+hn  s+ +r++++l+yysa+fds+++
  Gorai.008G243900.1 464 VDRLEDVRLWMLHVKEKETVAVNCVFQLHKTLYDGNGGA--LRDLLGLIRSTNPAVVVMAEQEAEHNVLSLEARVTNSLRYYSAIFDSIDS 552
                         ********************************6554444..588*********************************************** PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlg 361
                         +lp es  r+kvE++ ++rei+n++aceg++r+erhe++ekWr+ +e+  F+ + +se++  q ++ll+++  + y+v+   e+ g+l+l 
  Gorai.008G243900.1 553 SLPMESPVRMKVEEM-FAREIRNIIACEGSDRFERHESFEKWRKLMEQGRFRCIGISERELLQSQMLLKMYTCENYSVKkqgEDGGALTLS 642
                         ***************.********************************************************999****6766799999** PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W d+pL+svSaW+
  Gorai.008G243900.1 643 WLDQPLYSVSAWT 655
                         ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.638262632IPR005202Transcription factor GRAS
PfamPF035142.1E-127288655IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MLAGCSSSTL VSPRHRLRSE ASAQFQACHF PTSMSTQRLD LPCSFSRKDT SRSQPIRPVG  60
LSVEKPTESK TSGCSLKQNI RLPPLTTTAH EGRREIKDEF WEKGKCLKRF AAEGFIDESV  120
IDRRAKRKKG SCHNEISGDI HEGGGDNLSL GQLGAGEFWF QPSFAGHNAP QLPFSLTASG  180
DEERVCFVPG EVISPPLPLS NNPWTESVIT EITDVGEKDV ETIHRPVKEA SGSSTSSESH  240
SLGLRLNEQG TEHEVGNGSG NPYPHEGTGV GVYREEEINH REHQGFELIH LLTACVEAIG  300
SKNIAAINHY IAKLGDLASP RGSAISRLTA YYTEALTLRV TRLWPHIFHI TTPRELDRVD  360
DDNGTALRLL NQVSPIPKFF HFTSNEILLR AFEGKDRVHI IDFDIKQGLQ WPSLFQSLAS  420
RANPPSHVRV TGIGESKQEL NDTGDRLSGF AEALNLPFEF HPVVDRLEDV RLWMLHVKEK  480
ETVAVNCVFQ LHKTLYDGNG GALRDLLGLI RSTNPAVVVM AEQEAEHNVL SLEARVTNSL  540
RYYSAIFDSI DSSLPMESPV RMKVEEMFAR EIRNIIACEG SDRFERHESF EKWRKLMEQG  600
RFRCIGISER ELLQSQMLLK MYTCENYSVK KQGEDGGALT LSWLDQPLYS VSAWTPIDVA  660
GSSSSFPQPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-742746563380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439614.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A0D2U9170.0A0A0D2U917_GOSRA; Uncharacterized protein
STRINGGorai.008G243900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]