PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G235100.1
Common NameB456_008G235100, LOC105765103
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 308aa    MW: 33982.5 Da    PI: 9.6761
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G235100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041207229123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k+F++ ++L  H r++
  Gorai.008G235100.1 207 HRCELCKKTFRSFYTLDEHKRVC 229
                         79******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.159431IPR007087Zinc finger, C2H2
SMARTSM003550.82426IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-4527IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411207234IPR007087Zinc finger, C2H2
SMARTSM0035520207227IPR015880Zinc finger, C2H2-like
PfamPF139120.0021207227IPR007087Zinc finger, C2H2
SuperFamilySSF576678.35E-7207272No hitNo description
SMARTSM003550.59250272IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-12250272IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556250272IPR007087Zinc finger, C2H2
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEKQKCKLCA RTFSNGRALG GHMKGHLATH PLPRKTAQHH QLGGRTDSAS SSSSSSGEEQ  60
EEKTKVLEDK CFVYGLGENP MKSFRYADPD FSFAVIDSGS VVLDTESETE SRNPTRRRSK  120
RCPKACTNTK TTDGIKKQKL LRKPSLVESP TEPEPVSSVS DTSPEEHIAV CLMMLSRDVW  180
KSKNVEQNSE GNKKVRKSSK KKIHGKHRCE LCKKTFRSFY TLDEHKRVCS ETKKASKVAT  240
TAAGNNGKIF ECPLCYRVFG SGQALGGHKR SHLLAATPNS GKFYNNLIDL NLPAPLEDDE  300
FSVVSDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115138RRRSKRCPKACTNTKTTDGIKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439491.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D2TBE90.0A0A0D2TBE9_GOSRA; Uncharacterized protein
STRINGGorai.008G235100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17350611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-31C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]