PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 282aa MW: 31047.5 Da PI: 8.8089

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G232600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65	1.5e-20	141	191	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + r++lg+f+ta eAaka+++a+ kl+g Gorai.008G232600.1 141 HYRGVRQRP-WGKFAAEIRDP---NrRGSRIWLGTFDTAIEAAKAYDRAAFKLRG 191 8******.******9...4334***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.6E-32	140	200	IPR001471	AP2/ERF domain
CDD	cd00018	3.15E-32	140	199	No hit	No description
PROSITE profile	PS51032	24.223	141	199	IPR001471	AP2/ERF domain
Pfam	PF00847	1.7E-14	141	191	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.84E-23	141	200	IPR016177	DNA-binding domain
SMART	SM00380	4.3E-37	141	205	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-13	142	153	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-13	181	201	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MESSSEVSSA LQYIEQYLLD ENQFTPAGLG SFSTANQWIN EPIPEVSTSP SQSLCSQTST 60 SGSCLTLSNF NCLDDDDFFN FSPNFPAVKP PTPSSSSSSS HNRKPSLKIS LPHKVEWIQF 120 RKPDSTKAQP TNSNSEDKNK HYRGVRQRPW GKFAAEIRDP NRRGSRIWLG TFDTAIEAAK 180 AYDRAAFKLR GSKAILNFPL EAGKLDVTAV DGERKRSRDD GAGNEKQVKA VKRANDDVTK 240 ARDNGDAPLT PSNWTSFLDN MPLLSPLSPH PPLGFQQVKV I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-30	138	200	2	64	ATERF1
3gcc_A	3e-30	138	200	2	64	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC713910	1e-162	KC713910.1 Gossypium hirsutum ethylene-responsive transcription factor 11 (ERF11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636637.1	0.0	PREDICTED: ethylene-responsive transcription factor 5-like
Refseq	XP_017636653.1	0.0	PREDICTED: ethylene-responsive transcription factor 5-like
Swissprot	O80341	7e-66	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A0D2T5I9	0.0	A0A0D2T5I9_GOSRA; Uncharacterized protein
STRING	Gorai.008G232600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	1e-56	ethylene responsive element binding factor 5

Link Out ? help Back to Top
Phytozome	Gorai.008G232600.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]