PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G225800.2
Common NameB456_008G225800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 303aa    MW: 34405.6 Da    PI: 9.1918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G225800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14124175155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Gorai.008G225800.2 124 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 175
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.68E-13122179No hitNo description
SuperFamilySSF474597.63E-17122193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-14122179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.199123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MLESGLVFRE TRIARYIVWR CRLGFSREMT LETLSSNDLL NFVIYDTISA TPYNSNDSFV  60
TTFSMEEQST STALNCFPMV TPPQCCRSTA TEAMERRPNL AVQGRKKRRR KPRVCKNKEE  120
AETQRMTHIA VERNRRKQMN EHLAVLRSLM PESYVQRGDQ ASIVGGAIEF VKELEHLLQT  180
LEAEKFRVLQ QVTPAAAANE ETTNTNSKML SSPPFAQFLM QPQYTWSQIP NKYTSKTEAS  240
TADIEVTLIE THANLRILLR KGPTQLCKLV AGFQSLYLSI LHLNVTTLDP FVLYSISAKV  300
IL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110RKKRRRK
2104111RKKRRRKP
3105110KKRRRK
4124135RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431650.0AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439313.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ9C7T42e-60BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D2PZU90.0A0A0D2PZU9_GOSRA; Uncharacterized protein
STRINGGorai.008G225800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]