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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.008G225600.1 |
Common Name | B456_008G225600, LOC105764996 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
C3H |
Protein Properties |
Length: 329aa MW: 35914.7 Da PI: 7.6431 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.008G225600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 23.9 | 7.1e-08 | 82 | 106 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC+ f++ GtC+y +C+FaH+
Gorai.008G225600.1 82 FKTKLCCKFRA-GTCPYIKNCNFAHS 106
69*********.*************8 PP
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2 | zf-CCCH | 18.7 | 3e-06 | 156 | 181 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
yk + C+ f+ C+yGd+C+F H+
Gorai.008G225600.1 156 YKGRHCKKFYTEEGCPYGDNCTFLHD 181
78888********************7 PP
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3 | zf-CCCH | 35.1 | 2.3e-11 | 225 | 248 | 1 | 24 |
--S---SGGGGTS--TTTTT-SS- CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFa 24
+kt++C+ + tG+C++G++C+Fa
Gorai.008G225600.1 225 WKTRICNKWELTGYCPFGNKCHFA 248
8**********************8 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF90229 | 5.76E-8 | 79 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-14 | 79 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 81 | 107 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 82 | 106 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-9 | 153 | 183 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-7 | 154 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.058 | 155 | 182 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-14 | 219 | 254 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-8 | 221 | 251 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.9E-5 | 224 | 251 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.836 | 224 | 252 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 225 | 248 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MDYSRDNVVH VIPNPIDPSV WATEEDYRAW NSEETFNDTP SNFSYDQRQP QSRSNSDMPP 60 NKKSRNSQDL NSRSKAIGKM FFKTKLCCKF RAGTCPYIKN CNFAHSIEEL RRPPPNWQEI 120 VAAHEEEKGI LAEPREEFHI PSLGSNSFSG ETQRSYKGRH CKKFYTEEGC PYGDNCTFLH 180 DEQSKNRESV AISLGPGGYG GGGGGGGGAA SGGCGSGSNV KPSNWKTRIC NKWELTGYCP 240 FGNKCHFARG VAELHRHGGA LGDTEAKDSF VAPFDSKQAG GAPLKTPADT MAASIPSVPL 300 SDLGVPSQRT YCTPETRTNN SPQLEGSR*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC243165 | 0.0 | AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence. |