PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G219300.1
Common NameB456_008G219300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 239aa    MW: 26535 Da    PI: 6.5422
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G219300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-2096146255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa+a+++a+++++g
  Gorai.008G219300.1  96 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAARAYDKAALRIRG 146
                         7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-3295155IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2496156IPR016177DNA-binding domain
PROSITE profilePS5103224.55396154IPR001471AP2/ERF domain
CDDcd000184.55E-3096154No hitNo description
PfamPF008477.6E-1596146IPR001471AP2/ERF domain
SMARTSM003801.8E-3796160IPR001471AP2/ERF domain
PRINTSPR003671.1E-1197108IPR001471AP2/ERF domain
PRINTSPR003671.1E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAVESRQDTA SDKLLLEHVW ANFIGGKEAN TAAEPSMEIL ERLPSLGRWI SMGADAWEGL  60
LDGIIPSGNK IDQSCSDKTS SKVCSMRVDK VATTRHYRGV RRRPWGKYAA EIRDSSRKGA  120
RVWLGTFETA EEAARAYDKA ALRIRGPKAY LNFPLETVAN KATMVDNSIT GLGCVGNVPN  180
DRKRGCRDWE QNREYVMVEQ PTMKRMASVA EQVVEDGYGL FEFPDLGSDY LESLLSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2792157166ATERF1
3gcc_A1e-2792157166ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5845412e-92JX584541.1 Gossypium hirsutum clone NBRI_GE17876 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435740.11e-178PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLA0A0D2PZI11e-176A0A0D2PZI1_GOSRA; Uncharacterized protein
STRINGGorai.008G219300.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.16e-37ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]