PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G218300.2
Common NameB456_008G218300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 638aa    MW: 72339.1 Da    PI: 5.9446
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G218300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822146.91.7e-45461802133
              DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 
                         g+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr++  p+ ++++ ++s +a+   
  Gorai.008G218300.2  46 GKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRHSPPPQ-HQQHLNCSVKATLDC 135
                         899******************************************************************666665.889999998877766 PP

              DUF822  93 slq.sslkssalaspvesy...saspksssfpspssldsislasa 133
                         ++   ++  s  ++ ++s    +  ++s+++ps s ++s++  +a
  Gorai.008G218300.2 136 QQPvVRIDDSLSPASLDSVviaERDTRSEKYPSTSPINSVECLEA 180
                         655466666655555555411134455666777777766666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.4E-4246172IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.22E-157196632IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.806.5E-170199630IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.5E-81222594IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-55236250IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-55257275IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-55279300IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-55372394IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-55445464IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-55479495IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-55496507IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-55514537IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-55552574IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MESQPQPQPQ PRRPRGFAAT AAAAAASVSP TGTPSGSAGA STASSGKGKR EREKEKERTK  60
LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR EAGWTVEPDG TTYRHSPPPQ  120
HQQHLNCSVK ATLDCQQPVV RIDDSLSPAS LDSVVIAERD TRSEKYPSTS PINSVECLEA  180
DQLIQDVHST EHDNDFTGTQ YVPVYVKLST GVINNFCQLA DPDGVRQELS HMNSLNVDGV  240
IVDCWWGIVE CWNPQKYVWS GYRELFNYIR EFKMKIQVVM AFHEYGRTDS ADVLISLPNW  300
ILEIGKENQD IFFTDREGRR TTEFLSWGID KERVLNGRTG VEVYFDFMRS FRTEFDDLFA  360
EGLISAVEIG LGPSGELRYP SFSERMGWRY PGIGEFQCYD KYLQQHLQRA AKLRGHSFWA  420
RGPDNAGHYN SRPHETGFFC ERGDYDSYYG RFFLHWYAQA LMDHADNVLS LANLAFEETK  480
IIVKIPAVYW WYKTSSHAAE LTAGYYNPTN QDGYSPVFEV LKKHSVTVKF VCYGLQICSY  540
ENDEAFADPE GLSWQVLNSV WDRGLKVAGE NTLSCYDKEG CLRIIETAKP RNDPDRRHFS  600
FFVYQQPSPL VQGVICLPDL DYFIKCMHGD ITGDLVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12320059110401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431460.0AC243146.1 Gossypium hirsutum clone MX073K14-jni, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439179.10.0PREDICTED: beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0D2U7G90.0A0A0D2U7G9_GOSRA; Beta-amylase
STRINGGorai.008G218300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]