PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G213600.1

Common Name

B456_008G213600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 195aa MW: 21902.8 Da PI: 10.1576

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G213600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.7e-14	96	141	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ ++++ ++lG+g+W+ I++ + Rt+ q+ s+ qky Gorai.008G213600.1 96 KPWTEEEHRMFLEGLRKLGKGDWRGISKNYVTSRTPVQVASHAQKY 141 58*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.598	7	24	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	18.74	90	146	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.8E-18	93	144	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.67E-17	93	146	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-11	94	144	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	96	140	IPR009057	Homeodomain-like
Pfam	PF00249	3.3E-12	96	141	IPR001005	SANT/Myb domain
CDD	cd00167	3.77E-11	97	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MAKGTGRKCS HCGHNGHNSR TCSNGKGGYV KLFGVNIAAM AQTQECLMQR SFSMGNLPFH 60 AENHNNGGGV DDGYFSEGHT HSENHNAAAH DIKRAKPWTE EEHRMFLEGL RKLGKGDWRG 120 ISKNYVTSRT PVQVASHAQK YFLRLQAAGN NRKKRRPSLF DMSFQESKSE SVLPLNPILT 180 TCLYVQFNLF MLMTR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435738.1	1e-126	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q9FKF9	9e-55	M5162_ARATH; Probable transcription factor At5g61620
TrEMBL	A0A0D2TA31	1e-146	A0A0D2TA31_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.008G213600.1	1e-147	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6021	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	4e-57	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G213600.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252]