PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G209900.1

Common Name

B456_008G209900, LOC105764830

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 338aa MW: 37351.9 Da PI: 7.7234

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G209900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	7.9e-09	167	214	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+++Er RR++i +++ L+ l+P + +K Ka +L + ++Y++sLq Gorai.008G209900.1 167 SHSIAERVRRKKISERMKILQCLVPGC-----EKvTGKALMLDEIINYVQSLQ 214 8***********************9.....67699*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.07E-16	161	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.64E-9	161	218	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.9E-15	163	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.824	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-6	167	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-7	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MAAFSYILDP NIFLQNMAPT PKASSFMMDD GNLTSNCFSQ YYSPELFHDS LFDPNNHETS 60 CVDHCSKVVS QSDNEPSVGE KQSTGGGDST VVDKLEKGEQ VTQNVNPRNR KRKTRNGTTF 120 KTKDAKEGKA KEKKKCNNGK KGEKKSPEEP PSGYIHVRAR RGQATDSHSI AERVRRKKIS 180 ERMKILQCLV PGCEKVTGKA LMLDEIINYV QSLQNQVEFL SMKLASVSPM FYDFGVDLEA 240 LILVKPERVN SEASTTTPVL PCLQQCNPTQ ASAFVDSTTA TFAPSNNYPF LGASHQGQTP 300 ILFSHPQDNG SVLWDVEDQR QKSLNSSGLN DNLCSFH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.3358	6e-81	seedling

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX590864	1e-125	JX590864.1 Gossypium hirsutum clone NBRI_GE25866 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439056.1	0.0	PREDICTED: transcription factor bHLH137-like
TrEMBL	A0A0D2PYS3	0.0	A0A0D2PYS3_GOSRA; Uncharacterized protein
STRING	Gorai.008G209900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	4e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G209900.1
Entrez Gene	105764830

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]