PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G204400.2
Common NameB456_008G204400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 377aa    MW: 41315.1 Da    PI: 4.6862
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G204400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14.1e-10127149426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C ++++tG Ck+G +CkF+H+
  Gorai.008G204400.2 127 ESCAYYMKTGLCKFGYNCKFNHP 149
                         67********************8 PP
2zf-CCCH35.31.9e-11173196326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + +C++++rtG Ck+G+ C+F+H+
  Gorai.008G204400.2 173 QTECKYYLRTGGCKFGNACRFNHS 196
                         568********************8 PP
3zf-CCCH39.87.4e-13218242226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C++++r+G CkyG++C+F+H+
  Gorai.008G204400.2 218 GEKECPYYMRNGSCKYGANCRFNHP 242
                         6789********************9 PP
4zf-CCCH35.12.2e-11311335327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         + +C++++r+G+Ck+G+ CkF H++
  Gorai.008G204400.2 311 QTICSHYSRYGICKFGPACKFDHSK 335
                         679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.99123151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6123151IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-4123150IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-8127149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4128148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878170198IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5170197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6173198IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9173196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5176196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004216244IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6216243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6218243IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10218242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5222241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098308336IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5309335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6310337IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8311335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5313337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
SQSEETPVPH AMPTDSTSHL GLQSPDPGST SSPDLSPYDL NHSAVETEHE ESSLQQQLQN  60
LDLKEEEVKT DRKDDGERES NNDADGNAAE DEDDENEEER NDNEIDGENV KKSEGKRSHY  120
PVRPDAESCA YYMKTGLCKF GYNCKFNHPI RRTTQAVKEK VKEEVESTEK PSQTECKYYL  180
RTGGCKFGNA CRFNHSTAKS STSPILEFNF LGLPIRQGEK ECPYYMRNGS CKYGANCRFN  240
HPDPTAAGAC DPTSGYGNGG SVSPQAASQV NMLPWSSPRA LNETAAYIPI MFSPPQVVPP  300
PNPEWNGYQD QTICSHYSRY GICKFGPACK FDHSKQEAPS TMAMAGLDQP PPFSHSAATE  360
QTGIAGGTDT AVQQTV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5906580.0JX590658.1 Gossypium hirsutum clone NBRI_GE25620 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438978.10.0PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1
TrEMBLA0A0D2T9I40.0A0A0D2T9I4_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.008G204400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.15e-69C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]