PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 311aa MW: 34860.6 Da PI: 4.4526

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G190300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	92	145	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ +++ +LAk lgL+ rqV +WFqNrRa++k Gorai.008G190300.1 92 KKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWK 145 56689************************************************9 PP
2	HD-ZIP_I/II	127.3	6.4e-41	91	183	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe+e+kLep+rKv+la++Lglq rqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+++L+ee+ Gorai.008G190300.1 91 EKKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWKTKQLEKDYDSLQASYNSLKADYDNLVKETDKLKEEV 181 69**************************************************************************************998 PP HD-ZIP_I/II 92 ke 93 + Gorai.008G190300.1 182 VQ 183 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.329	87	147	IPR001356	Homeobox domain
SMART	SM00389	8.4E-18	90	151	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.78E-18	91	157	IPR009057	Homeodomain-like
Pfam	PF00046	1.5E-16	92	145	IPR001356	Homeobox domain
CDD	cd00086	4.11E-17	92	148	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.9E-20	94	155	IPR009057	Homeodomain-like
PRINTS	PR00031	8.9E-6	118	127	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	122	145	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.9E-6	127	143	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.6E-15	147	188	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MAGGRVYRSN TSADAGSNNL SVLLQSQWVP SSSEPLDTLF IPGSSPSPFL VSGTRSMVSF 60 EGVDRRRSYF RTFDGEEKVE EDIEEYLHRS EKKRRLTVDQ VQFLEKSFEA ENKLEPDRKV 120 QLAKDLGLQS RQVAIWFQNR RARWKTKQLE KDYDSLQASY NSLKADYDNL VKETDKLKEE 180 VVQLTDKLLL EGKDKGEPEL PDAKTSSQEL PSEAAEGEES KVVPVVSAKS DYTEGVHSSV 240 LLEGAGSTYP FEPDQSDLSQ DEEDNLSKGL LHLPSCVFPK LQDIDYSDPP AGSCNFGFPL 300 DDHAFWSWAC *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438715.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
Swissprot	Q02283	6e-45	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A0D2U5T4	0.0	A0A0D2U5T4_GOSRA; Uncharacterized protein
STRING	Gorai.008G190300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-46	homeobox 1

Link Out ? help Back to Top
Phytozome	Gorai.008G190300.1
Entrez Gene	105764614

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]