PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G186700.1

Common Name

B456_008G186700, LOC105764572

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 346aa MW: 38177.1 Da PI: 6.1872

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G186700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.9	2.1e-14	161	207	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Gorai.008G186700.1 161 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 207 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-12	161	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-14	162	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.19E-14	162	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-13	164	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.62E-5	171	210	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.2E-4	243	300	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MCGKKDEDQG ECSQAIHNIQ GYQEQIYMQQ QHQQMQQQQH NIDLFGGTRG GLIFPEVSPI 60 LPWSLPPIHN FNPALFTGNP VRDDDPFLVP PPPTSYGGLF NRRAPSLQFA YDGTSADHLR 120 ILSDTLGPGV QPGSAPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR RERINNHLAK 180 LRSLLPSTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPV PTEIDELTVD TSEEDGKFVI 240 KASLCCEDRS DLLPDLIKTL KALHLKTLKA EITTLGGRVK NVLFITGEED SSSSGEQQQQ 300 QLQYCISSIQ EALKAVMEKT SVDESSSGNV KRQRTNISIL EHRSL*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MCGKKDEDQG ECSQAIHNIQ GYQEQIYMQQ QHQQMQQQQH NIDLFGGTRG GLIFPEVSPI  60
LPWSLPPIHN FNPALFTGNP VRDDDPFLVP PPPTSYGGLF NRRAPSLQFA YDGTSADHLR  120
ILSDTLGPGV QPGSAPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR RERINNHLAK  180
LRSLLPSTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPV PTEIDELTVD TSEEDGKFVI  240
KASLCCEDRS DLLPDLIKTL KALHLKTLKA EITTLGGRVK NVLFITGEED SSSSGEQQQQ  300
QLQYCISSIQ EALKAVMEKT SVDESSSGNV KRQRTNISIL EHRSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	171	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438654.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-114	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0D2PX93	0.0	A0A0D2PX93_GOSRA; Uncharacterized protein
STRING	Gorai.008G186700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	7e-89	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G186700.1
Entrez Gene	105764572

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]