PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G178000.3
Common NameB456_008G178000, LOC105764478
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 463aa    MW: 50744.5 Da    PI: 9.468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G178000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00147190221
                        EETTTTEEESSHHHHHHHHH CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                        +C+ Cgk F++   L  H++
  Gorai.008G178000.3 71 VCKECGKGFRSLKALCGHMS 90
                        8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0197092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.187097IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-47198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-67294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM003550.18313335IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-6313336IPR007087Zinc finger, C2H2
SuperFamilySSF576671.92E-6313335No hitNo description
PROSITE profilePS5015710.097313340IPR007087Zinc finger, C2H2
PROSITE patternPS000280315335IPR007087Zinc finger, C2H2
SuperFamilySSF576671.92E-6391418No hitNo description
PROSITE profilePS501578.871396418IPR007087Zinc finger, C2H2
SMARTSM003550.19396418IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-8396418IPR007087Zinc finger, C2H2
PROSITE patternPS000280398418IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MKHDSFAETE EESADMPINR LISTANPRNI KRFVVSDAGG QSAAYGLREN PKKTKRFSDS  60
GNGSSLKEML VCKECGKGFR SLKALCGHMS CHSDNGEKQK VIMDSQSDTE TSAPSKRRSR  120
RGTPKTIGVY RNNNSENLGN GSSSVSEIVQ EQEEVAMCLM MLSRDSGCRK RMNSAADSSD  180
NNSVVLEDKS SSIDVTITIK NDMNRGGLLK MTKQRDNKLK KSPESDPSSE NSDSGYFRNG  240
PKKVESDDSV DGFLKNNEFK KPNIESGSGF RDRDATYSKC LSKFKSVKTG SPKYDLRKNG  300
KNDYYSPQKG SKYECLTCNK TFDSHRALGG HRASHTKVNG YNESIQESYE ANDSFTAPMT  360
DTKVTKASSN GKRLGVPRGS SYNAEKRLGS KKNKGHECPF CFRVFKSGQA LGGHKRSHFV  420
GGSDDRTLVI KQDSSDMPAL IDLNLPAPVE EDAFGNAAGF MP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438523.10.0PREDICTED: zinc finger protein 37-like isoform X2
TrEMBLA0A0D2U5420.0A0A0D2U542_GOSRA; Uncharacterized protein
STRINGGorai.008G178000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-67C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]