 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gorai.008G166000.1 |
| Common Name | B456_008G166000, LOC105764349 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
SBP |
| Protein Properties |
Length: 303aa MW: 33199.8 Da PI: 8.4275 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.008G166000.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 132 | 2e-41 | 24 | 100 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
C v+gC+adls++++yhrrhkvCevhsk+p+v+++g+eqrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
Gorai.008G166000.1 24 CLVDGCTADLSKCRDYHRRHKVCEVHSKTPKVTIRGQEQRFCQQCSRFHSLVEFDEVKRSCRKRLDGHNRRRRKPQP 100
**************************************************************************997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MESSSSASFK RARAPATGNQ LPSCLVDGCT ADLSKCRDYH RRHKVCEVHS KTPKVTIRGQ 60
EQRFCQQCSR FHSLVEFDEV KRSCRKRLDG HNRRRRKPQP DFMSVNSGRF PYNHQGTRYF 120
PIGSSQMHSW MGGVKVESDM KLINFSGGNS LFPGFSSDNH HKGEKHFSFL QTTASSHPGS 180
GSLCQPFFEA SSSGDNSRKM FSDGLNQAID SDRALSLLSS QPAETREIGL SPMVQPASAS 240
FVIPNLQFND VGGMGGEPVG TSILDADGGG NNSHLQGHEM FQNEHLGSSA TGAHHTLSFS 300
WE*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 80 | 97 | KRSCRKRLDGHNRRRRKP |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
| Uniprot | TISSUE SPECIFICITY: Strongly expressed in immature ears and weakly in husks. Found in the inflorescence meristem of the developing ear, in the spikelet pair primordia, the glume primordia, the cupule forming region and other floral organs. Not detected in other tissues. {ECO:0000250|UniProtKB:Q49I55}. |
| Uniprot | TISSUE SPECIFICITY: Strongly expressed in immature ears and weakly in husks. Found in the inflorescence meristem of the developing ear, in the spikelet pair primordia, the glume primordia, the cupule forming region and other floral organs. Not detected in other tissues. {ECO:0000269|PubMed:16079849}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | SBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}. |
| UniProt | SBP transcriptional regulator probably involved in the domestication of maize (PubMed:16079849). Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif (PubMed:25943393). May repress the growth of lateral branches in length and numbers (PubMed:25943393). {ECO:0000269|PubMed:16079849, ECO:0000269|PubMed:25943393}. |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ622327 | 0.0 | KJ622327.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL19) mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Schnable PS, et al.
The B73 maize genome: complexity, diversity, and dynamics.
Science, 2009. 326(5956): p. 1112-5
[PMID:19965430] - Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY
High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice.
Theor. Appl. Genet., 2011. 122(8): p. 1489-96
[PMID:21327937] - Wang S, et al.
Control of grain size, shape and quality by OsSPL16 in rice.
Nat. Genet., 2012. 44(8): p. 950-4
[PMID:22729225] - Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Wang H,Studer AJ,Zhao Q,Meeley R,Doebley JF
Evidence That the Origin of Naked Kernels During Maize Domestication Was Caused by a Single Amino Acid Substitution in tga1.
Genetics, 2015. 200(3): p. 965-74
[PMID:25943393] - Wang S, et al.
The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.
Nat. Genet., 2015. 47(8): p. 949-54
[PMID:26147620] - Wang Y, et al.
A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.).
Planta, 2016. 243(2): p. 459-71
[PMID:26474992] - Lee CM, et al.
Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters.
Rice (N Y), 2015. 8(1): p. 33
[PMID:26519289] - Bessho-Uehara K, et al.
Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74
[PMID:27466405]
|
