PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G158000.2
Common NameB456_008G158000, LOC105764260
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 225aa    MW: 25457.8 Da    PI: 6.9835
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G158000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WTteEd ll +++ ++G g W+  a++ g++R++k+c++rw++yl
  Gorai.008G158000.2 13 KGPWTTEEDTLLTRYIGRHGVGPWNMLAKCAGLKRSGKSCRLRWLNYL 60
                        79********************************************97 PP
2Myb_DNA-binding49.87.6e-1666109146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Gorai.008G158000.2  66 RGNLTLQEQQLILQLHSLWGNR-WSKIAEHLP-GRTDNEIKNYWRT 109
                         7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.519860IPR017930Myb domain
SuperFamilySSF466892.7E-3011107IPR009057Homeodomain-like
SMARTSM007173.6E-131262IPR001005SANT/Myb domain
PfamPF002498.5E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-221467IPR009057Homeodomain-like
CDDcd001672.55E-101560No hitNo description
PROSITE profilePS5129424.80461115IPR017930Myb domain
SMARTSM007172.7E-1465113IPR001005SANT/Myb domain
PfamPF002498.4E-1566109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2268114IPR009057Homeodomain-like
CDDcd001671.98E-786109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSTLIEEEIE VRKGPWTTEE DTLLTRYIGR HGVGPWNMLA KCAGLKRSGK SCRLRWLNYL  60
NPDIKRGNLT LQEQQLILQL HSLWGNRWSK IAEHLPGRTD NEIKNYWRTR VQNKQPSSSS  120
LKEMSSQFSV PCQLPECIVP SGSVINISQQ IEFPQHETSP NAYAHTCVDN NNLVLNGSYN  180
IGRSGQDMEA FRLASMSAVG EGCWICNEMT DSLWQCRELG EMGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26131147107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in floral tissues. expressed in all four whorls of the flower, in the anther vascular tissue and in cells at the junction between anther and stamen filaments. Detected in the nectaries and ovules. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19325888, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438236.11e-167PREDICTED: myb-related protein 340-like isoform X2
RefseqXP_016735933.11e-167PREDICTED: myb-related protein 340-like isoform X2
SwissprotQ9LK955e-57MYB21_ARATH; Transcription factor MYB21
TrEMBLA0A0D2T1931e-166A0A0D2T193_GOSRA; Uncharacterized protein
TrEMBLA0A1U8ND981e-166A0A1U8ND98_GOSHI; myb-related protein 340-like isoform X2
STRINGGorai.008G158000.11e-143(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-51myb domain protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Su Z, et al.
    Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis.
    Plant Cell, 2013. 25(10): p. 3785-807
    [PMID:24179129]
  4. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  5. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  6. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]