PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G151100.1
Common NameB456_008G151100, LOC105764175
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 263aa    MW: 30082.3 Da    PI: 5.1952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G151100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l  +++++G  +W+  +++ g+ R++k+c++rw +yl
  Gorai.008G151100.1 14 KGAWSPEEDHKLRSYIEKFGHWNWRELPKYAGLERCGKSCRLRWMNYL 61
                        79******************99************************97 PP
2Myb_DNA-binding52.98.5e-1768109245
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         g+ T+eEd l+ ++++++G++ W+ Ia++++ gRt++++k++w+
  Gorai.008G151100.1  68 GNYTEEEDALIMKLHQEYGNR-WSMIAARLP-GRTDNEIKNHWH 109
                         789******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.679961IPR017930Myb domain
SuperFamilySSF466895.99E-3111108IPR009057Homeodomain-like
SMARTSM007172.1E-101363IPR001005SANT/Myb domain
PfamPF002493.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231568IPR009057Homeodomain-like
CDDcd001673.65E-91661No hitNo description
PROSITE profilePS5129426.29462116IPR017930Myb domain
SMARTSM007178.0E-1666114IPR001005SANT/Myb domain
PfamPF002494.9E-1568109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2669114IPR009057Homeodomain-like
CDDcd001672.69E-1269109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVRAPFYDKN GMKKGAWSPE EDHKLRSYIE KFGHWNWREL PKYAGLERCG KSCRLRWMNY  60
LRPDVKHGNY TEEEDALIMK LHQEYGNRWS MIAARLPGRT DNEIKNHWHA RLKTRAKRNQ  120
TSSTDSQSES AHSWEGEGES MVIDTPPNMI LESSRLSPTI SSSTEFSSFS PPPIDSGYTS  180
NLNLSGVAVE PPPYSSTEIY EDQRGGGDFW SEPFVADNVY NQDGYPSSSL GRGGFDMPLP  240
YDHFYDDDSP DLLLYQMMQG WV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5787165e-66JX578716.1 Gossypium hirsutum clone NBRI_GE10796 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438142.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_012438143.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A0D2U3M90.0A0A0D2U3M9_GOSRA; Uncharacterized protein
STRINGGorai.008G151100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17768510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.19e-55myb domain protein 63
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]