PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G134300.1
Common NameB456_008G134300, LOC105764002
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 508aa    MW: 55455.5 Da    PI: 7.4831
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G134300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30277334359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Gorai.008G134300.1 277 DGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHNHH 334
                         9********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-33260336IPR003657WRKY domain
SuperFamilySSF1182903.66E-27269336IPR003657WRKY domain
PROSITE profilePS5081128.736270336IPR003657WRKY domain
SMARTSM007741.6E-36275335IPR003657WRKY domain
PfamPF031063.1E-26277334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEKHHPLPFF HSDDLLRRRS AASDRIHDDS SDDHVKVKPH IMEMDFFSTD HHQDSKINTN  60
ASSSSFDVNT GLNLVSSRTA SDKKSNTEMS VLKIELERLQ EENRRLKSML DHITRNYNEL  120
QGQLFMAVQK QALLAINKQQ VNKEGVKGMS SHPIMSIQQS MDPRRPLTTL DVNEPSATDD  180
KRTELSASSP ANATTSTMDV VSKDGNDDHH RTVQIQGKHV FVEDVIDQTC QQSWGTSPKS  240
SPMVDEPKKE EEQVPEVALK KARVSVRARS EAPMIIDGCQ WRKYGQKMAK GNPCPRAYYR  300
CTMAVGCPVR KQVQRCAEDK SILITTYEGN HNHHLPPAAT AMAKTTCAAA AMVLSGSTTS  360
NDGLPNSGYF HSSLPYATMA TLSASPPFPT ITLDLTQGPN PVPFIRPPPS PPTFPLPLHG  420
YPKLSALPAM QIGQQQQQHT ASMVETVTAA IASDPNFTAV LAAAISTFMG SPPPPLPPSN  480
NGNNSTTSQA LPGSPQLPQS CTTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-20266336877Probable WRKY transcription factor 4
2lex_A1e-20266336877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311150.0KF031115.1 Gossypium hirsutum WRKY transcription factor 103 (WRKY103) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437882.10.0PREDICTED: probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0D2SZY80.0A0A0D2SZY8_GOSRA; Uncharacterized protein
STRINGGorai.008G134300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.13e-71WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]