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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G132000.2 | ||||||||
Common Name | B456_008G132000, LOC105763978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 739aa MW: 80402 Da PI: 6.5853 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Gorai.008G132000.2 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.98E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.091 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.0E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MDTYSSGEEL VTKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEALAKG VPIGQALDIE IPPPRPKRKP NNPYPRKTGA ATTIQDGAKD 120 GKSETPISSS RCKQVLDLEK EPLPERPNGD EKSTNLKENQ DESCSGVFTL LHEANCSSAS 180 SMNKNFIPAS AALKSSCTFR EFVPSPKEKI HDNGTSKASN LEYSCTSYDK PAQVQRKDDL 240 DGALCADEMQ AAQNYPRHVS VHVLDGSLRT CAQNPSLDMS FQDSVFHPMG DVHGPNLSAN 300 LAASAATEHQ NNALRSTQQA LPPFHTPFMH LRPNQQDYRS FLHVSSTFSS LIVSTLLQNP 360 AAHAAASFAA RFWPYANIES SGDSPACGLG GFPSRQINSA PSMAAIAAAT VAAATAWWAA 420 HGLFPVCAPL HTGFTCFPAS TAAVPPMENG QPPAAKTEQK GKTDQALSLQ VEQLDPENSE 480 ALQGQHSSSK SPTSSSSDCE ERGDAKVNTG VKATDDEMAA EVIEPQDANK TKNKKQVDRS 540 SCGSNTPSSS EVETDALEKH EKDKEDSKGA DPNHPQVECS RRSSRSNSNL SDSWKEVSEE 600 GRLAFQALFS REVLPQSFSP PHDGKSKGQQ KENIGEDKQN PAEEDEEIST LDLNSKTLGS 660 CSDHQVTVKN ALSRDKNTTE EGLLTIGLGH SKLKAGRTGF KPYKRCSVEA KENRVMNTGS 720 QGEEKGPKRV RLEGEAST* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots, stems, flowers and siliques. {ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the circadian clock. Binds to the promoter region of APRR1/TOC1 and TCP21/CHE to repress their transcription. Represses both CCA1 and itself. {ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:9657154}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with peak levels occurring around 1 hour after dawn. Up-regulated by APRR1/TOC1 and transiently by light treatment. Down-regulated by APRR5, APRR7 and APRR9. {ECO:0000269|PubMed:12574129, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19286557, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:9657154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437835.1 | 0.0 | PREDICTED: protein LHY-like isoform X2 | ||||
Swissprot | Q6R0H1 | 1e-159 | LHY_ARATH; Protein LHY | ||||
TrEMBL | A0A0D2U2B7 | 0.0 | A0A0D2U2B7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G132000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 1e-147 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G132000.2 |
Entrez Gene | 105763978 |