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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.008G128000.1 |
Common Name | B456_008G128000, LOC105763936 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HD-ZIP |
Protein Properties |
Length: 246aa MW: 28834.1 Da PI: 4.9256 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.008G128000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 55.7 | 8.6e-18 | 45 | 98 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++f++eq++ Le++Fe+++ + +++ e Ak lgL+ rqV +WFqN+Ra++k
Gorai.008G128000.1 45 NKRRFSDEQIRSLESMFESESRLEPRKKLEVAKDLGLQPRQVAIWFQNKRARRK 98
5679************************************************99 PP
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2 | HD-ZIP_I/II | 118.7 | 3.1e-38 | 45 | 136 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+krr+s+eq+++LE++Fe+e++Lep++K e+a++Lglqprqva+WFqn+RAR k+kqlE+dy++L+++yd+l+++ e+L+ke+++L+ +l+
Gorai.008G128000.1 45 NKRRFSDEQIRSLESMFESESRLEPRKKLEVAKDLGLQPRQVAIWFQNKRARRKSKQLERDYTMLQSNYDNLASKYESLKKEKQALAFQLQ 135
79*************************************************************************************9998 PP
HD-ZIP_I/II 93 e 93
+
Gorai.008G128000.1 136 K 136
6 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MRSYHIQPQK EDQILVGEYT QRIIEDPFSG MPEITTTKKK KNNNNKRRFS DEQIRSLESM 60 FESESRLEPR KKLEVAKDLG LQPRQVAIWF QNKRARRKSK QLERDYTMLQ SNYDNLASKY 120 ESLKKEKQAL AFQLQKLKDL VKKPKEEDDG QCCGDQQVIT MEGEAIKSDS EEQHSFSMER 180 SEHGLGVLSD DDSTIMTSYF ELEQEPTSFI TMVELGPSRE DWHSFETDGL FDQSSNGYQW 240 WDFWS*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |