PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 273aa MW: 29920.9 Da PI: 8.7324

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G126800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.6e-39	43	103	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss Gorai.008G126800.1 43 PPEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 103 57899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	42	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	46	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDSDKWSQGF QVKSMEEMMV ANNNTCTKGT TTTTTVLEKK TRPPEQLNCP RCNSTNTKFC 60 YYNNYSLTQP RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSSISASSSS SSSSSSSSTA 120 FASDSAKVLD LNPSTFSLLS SSQNPNKVHY KGQDLNLTFP PMQEPGLYDH QHNYYYYYNN 180 TGMVSRGLNS FVPAPAAPAT PAPATLFSMQ DYKPTLSSTT FPIHSGVQGF PFGEMKQVSS 240 TNNEVDDDQN KEQSNSTGFW NNNGVLGGGG SW*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393560	3e-92	GQ393560.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0525 SSR marker CGR5558 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437781.1	0.0	PREDICTED: dof zinc finger protein DOF3.7
Swissprot	Q43385	5e-59	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A0D2RED9	0.0	A0A0D2RED9_GOSRA; Uncharacterized protein
STRING	Gorai.008G126800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28385	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.1	2e-51	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G126800.1
Entrez Gene	105763920

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]