PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G126000.1
Common NameB456_008G126000, LOC105763912
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 185aa    MW: 20383.8 Da    PI: 5.6887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G126000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-193585155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Gorai.008G126000.1 35 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAFCLRG 85
                        68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-133585IPR001471AP2/ERF domain
PROSITE profilePS5103223.8413693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-313694IPR001471AP2/ERF domain
SMARTSM003804.7E-373699IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-223695IPR016177DNA-binding domain
CDDcd000181.88E-323794No hitNo description
PRINTSPR003673.2E-133748IPR001471AP2/ERF domain
PRINTSPR003673.2E-137595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEQPPYTEDD LNASTASPES AMKHDTKGGG GTRHPVYRGV RKRRWGKWVS EIREPRKKSR  60
IWLGSFPVPE MAAKAYDVAA FCLRGRKAQL NFPDEVDDLP IPLTSTARDI QAAAAKAAHL  120
VVSSSKKIPE SSEDGSDDFW GEIELPELMN NGGCQWNSCG WTFAGDSSWL DGETQTQQHF  180
LACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-182997776Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437772.11e-136PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI25e-60ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A0D2PTU31e-135A0A0D2PTU3_GOSRA; Uncharacterized protein
TrEMBLA0A2P5RE511e-135A0A2P5RE51_GOSBA; Uncharacterized protein
STRINGGorai.008G126000.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-61ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]