PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G117400.1
Common NameB456_008G117400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 390aa    MW: 43963.8 Da    PI: 9.5797
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G117400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-093576148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd  l  av+++ g++Wk+I      g t+ qc +rwqk+l
  Gorai.008G117400.1 35 KGGWTEEEDNMLTIAVQKFNGKNWKKI------GITDVQCLHRWQKVL 76
                        688***********************4......58999*******986 PP
2Myb_DNA-binding56.94.7e-1882128148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd+l+ ++v++ G++ W+ Ia+ ++ gR +kqc++rw ++l
  Gorai.008G117400.1  82 KGPWTKEEDDLIFELVEKQGKKKWSEIAKFLP-GRIGKQCRERWCNHL 128
                         79******************************.*************96 PP
3Myb_DNA-binding51.42.4e-16135176245
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +WT +E+++l+ a+  +G++ W+ Ia+ ++ gRt++++k++w+
  Gorai.008G117400.1 135 TAWTVDEELILISAHGAYGNR-WAEIAKLLP-GRTENSIKNHWN 176
                         68*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.9173076IPR017930Myb domain
SuperFamilySSF466899.33E-143390IPR009057Homeodomain-like
SMARTSM007174.9E-43478IPR001005SANT/Myb domain
PfamPF002496.4E-73576IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-153788IPR009057Homeodomain-like
PROSITE profilePS5129430.77577132IPR017930Myb domain
SuperFamilySSF466891.36E-3179175IPR009057Homeodomain-like
SMARTSM007171.2E-1781130IPR001005SANT/Myb domain
PfamPF002492.3E-1782128IPR001005SANT/Myb domain
CDDcd001671.33E-1584128No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2789135IPR009057Homeodomain-like
SMARTSM007174.2E-16133181IPR001005SANT/Myb domain
PROSITE profilePS5129421.408133183IPR017930Myb domain
PfamPF002495.0E-15134177IPR001005SANT/Myb domain
CDDcd001671.58E-11136176No hitNo description
Gene3DG3DSA:1.10.10.606.9E-23136183IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEQIATDNNT TTIDADQSTV SVQGRISGPT RRSTKGGWTE EEDNMLTIAV QKFNGKNWKK  60
IGITDVQCLH RWQKVLNPDL VKGPWTKEED DLIFELVEKQ GKKKWSEIAK FLPGRIGKQC  120
RERWCNHLNP DIKKTAWTVD EELILISAHG AYGNRWAEIA KLLPGRTENS IKNHWNSSVR  180
KKVDAMAASR INAVDHSPKA ECISLGISKP LEQNLDRGRS ISFFSMCKDA NGIMKPSSLN  240
ISIKRYEDLT IENCRVHSYD PLPRNRQMHY CDSRSHCNVT FGDHERITSQ CFLARMHAGS  300
SFQPSSDSLH APVSASCFRC SGNEIPDANS YISLESILRS AAKSFKNTPS IIRKRTSQIR  360
TQADNHNINQ LPISPTKSPK LENKAHPRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-62351836159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-62351836159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016731361.10.0PREDICTED: transcription factor MYB32-like
TrEMBLA0A0D2T4I30.0A0A0D2T4I3_GOSRA; Uncharacterized protein
STRINGGorai.008G117400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.26e-81myb domain protein 3r-4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]