PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G106900.4 | ||||||||
Common Name | B456_008G106900, LOC105763732 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 447aa MW: 48637.6 Da PI: 6.2898 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.9 | 1.1e-15 | 283 | 328 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Gorai.008G106900.4 283 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 328 9************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.815 | 278 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-19 | 281 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-18 | 283 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.41E-17 | 283 | 332 | No hit | No description |
Pfam | PF00010 | 3.0E-13 | 283 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-18 | 284 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MSQCVPSWEL DDNNPLTTRH HSFRFNSNST APDVPMLDYE VAELTWENGQ LAMHSLGPPR 60 VVAKQLNATT WDKPRASGGG GGTLESIVNQ ATCFPYGSKD SVGAGGDELV WLDHHRVSAA 120 ASSSSATMAM DALVPCSEDK TTTAHVLESM PGLGGGGTCM MGCSTRVGSC SGTVNTQDDV 180 TRKREKAVGV QVAPPEWEQS ASASATFGRD SHRNVTVDTY DKDFGVGFTS ISHGSIENTK 240 TATDNDHDSA SHSKPQEETG EEDKKETMKS SISTKRSRAA AIHNQSERKR RDKINQRMKT 300 LQKLVPNSSK TDKASMLDEV IEYLKQLQAQ VQMMNRMNLP SMMLQQQLQM SMMAPMGMGM 360 SVMDMNFMGR PNIIGISPVL SNPFMTMNTP WDGSNNNDRL QQAASMTDPL STFLACQSQP 420 MTMDAYSRMA AMYQQMQQPP ASSSKS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 286 | 291 | ERKRRD |
2 | 287 | 292 | RKRRDK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.35 | 0.0 | seedling |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48775856 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437518.1 | 0.0 | PREDICTED: transcription factor UNE10-like isoform X2 | ||||
Swissprot | Q8GZ38 | 1e-112 | UNE10_ARATH; Transcription factor UNE10 | ||||
TrEMBL | A0A0D2RDA4 | 0.0 | A0A0D2RDA4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G106900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-102 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G106900.4 |
Entrez Gene | 105763732 |
Publications ? help Back to Top | |||
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