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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Gorai.008G106500.1 |
| Common Name | B456_008G106500, LOC105763727 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
C2H2 |
| Protein Properties |
Length: 320aa MW: 36075.1 Da PI: 6.1032 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.008G106500.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.3 | 0.0011 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ C ksF + L H+r+H
Gorai.008G106500.1 4 HRCKLCLKSFINGRALGGHMRSH 26
79********************9 PP
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| 2 | zf-C2H2 | 13.3 | 0.00024 | 189 | 211 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C+++F++ L H +H
Gorai.008G106500.1 189 YRCETCNRVFKSYQALGGHRASH 211
9************9999998887 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 8.03E-5 | 3 | 31 | No hit | No description |
| PROSITE profile | PS50157 | 10.138 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 5.7E-7 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.1 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 2.87E-6 | 189 | 263 | No hit | No description |
| Pfam | PF13912 | 6.6E-11 | 189 | 213 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.02 | 189 | 211 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.801 | 189 | 216 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 191 | 211 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 1.3E-9 | 240 | 263 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.46 | 241 | 263 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.037 | 241 | 263 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 243 | 263 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MEKHRCKLCL KSFINGRALG GHMRSHMLNL PIHVNQVSQE SVSASASYSS DEDDDDKKEQ 60
IYGLRENPKR SVRMVDPEFI DAGSVVVQDR ESETESSKNL TRRRSKRTRK TLYQHEEEEV 120
VKVNITESVS SISDTTTEED VAFCLMMLSR DQWKQHDEQE QDDESEEETE ESEEYLKSTK 180
PNRSTRGKYR CETCNRVFKS YQALGGHRAS HKKMKPYSPA TEKIHEPPEN VGTSIPEKKT 240
HECPVCFRIF SSGQALGGHK RSHVTGQVIA TSTTKTAVTS SKKLGDSLID LNLPAPMDDD 300
DISQIEVSAV SDAEFVKPF*
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