PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 466aa MW: 53659.1 Da PI: 6.3621

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G099700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.2	5.1e-29	40	124	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r++ k+plWeevs+k++e g++r++k+Ckek+en+ k+++++keg++++++++s +++f+qlea Gorai.008G099700.1 40 RWPRQETLALLKIRSEMDVAFRDSGVKAPLWEEVSRKLAELGYNRGAKKCKEKFENVYKYHRRTKEGRSGKSNGKS--YRFFEQLEA 124 8******************************************************************9877776..*****85 PP
2	trihelix	106.2	2.3e-33	304	389	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev aLi++r++++ +++++ k+plWee+s +m++ g+ rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a Gorai.008G099700.1 304 RWPKDEVEALIRLRTNLDMQYQDAGPKGPLWEEISTAMKKLGYDRSAKRCKEKWENMNKYFKRVKESNKKR-PEDSKTCPYFHQLDA 389 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.05	33	97	IPR017877	Myb-like domain
SMART	SM00717	0.0057	37	99	IPR001005	SANT/Myb domain
Pfam	PF13837	7.8E-19	39	125	No hit	No description
CDD	cd12203	1.00E-22	39	104	No hit	No description
PROSITE profile	PS50090	7.793	297	361	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.2E-5	300	361	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-4	301	363	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.8E-5	302	373	IPR009057	Homeodomain-like
Pfam	PF13837	5.1E-24	303	390	No hit	No description
CDD	cd12203	1.10E-24	303	368	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MMENSSFPES NTVGDNVSLE NEEEAKVKNE ESEGNFSGNR WPRQETLALL KIRSEMDVAF 60 RDSGVKAPLW EEVSRKLAEL GYNRGAKKCK EKFENVYKYH RRTKEGRSGK SNGKSYRFFE 120 QLEALDHHPS LVPPASGDIN TSVEPLNVIH DAIPFSVRNP ASNFNETSTS TTSSSSKESD 180 GTRKKKRKLT DFFERLMREM MEKQENLQKK FIEAIEKSEL DRMAREEAWK VQELARLKRE 240 RELLVQERSI AAAKDAAVLA FLQKFSDQTT SVQLPDISFP VEKVVDRQEN SNGSESYMHL 300 STSRWPKDEV EALIRLRTNL DMQYQDAGPK GPLWEEISTA MKKLGYDRSA KRCKEKWENM 360 NKYFKRVKES NKKRPEDSKT CPYFHQLDAL YKEKTKRIDG SGYELKPEEL LMHMMGAQEE 420 RLHQESATED VESENVNQNR EENRNAEGDA YQIVANDPSP MPIIG*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MMENSSFPES NTVGDNVSLE NEEEAKVKNE ESEGNFSGNR WPRQETLALL KIRSEMDVAF  60
RDSGVKAPLW EEVSRKLAEL GYNRGAKKCK EKFENVYKYH RRTKEGRSGK SNGKSYRFFE  120
QLEALDHHPS LVPPASGDIN TSVEPLNVIH DAIPFSVRNP ASNFNETSTS TTSSSSKESD  180
GTRKKKRKLT DFFERLMREM MEKQENLQKK FIEAIEKSEL DRMAREEAWK VQELARLKRE  240
RELLVQERSI AAAKDAAVLA FLQKFSDQTT SVQLPDISFP VEKVVDRQEN SNGSESYMHL  300
STSRWPKDEV EALIRLRTNL DMQYQDAGPK GPLWEEISTA MKKLGYDRSA KRCKEKWENM  360
NKYFKRVKES NKKRPEDSKT CPYFHQLDAL YKEKTKRIDG SGYELKPEEL LMHMMGAQEE  420
RLHQESATED VESENVNQNR EENRNAEGDA YQIVANDPSP MPIIG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	188	KKKRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437382.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-125	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A0D2SY59	0.0	A0A0D2SY59_GOSRA; Uncharacterized protein
STRING	Gorai.008G099700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5995	28	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-119	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G099700.1
Entrez Gene	105763645

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]