PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G097200.2
Common NameB456_008G097200, LOC105763606
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 883aa    MW: 98086 Da    PI: 6.5517
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G097200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23128229199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++ +r++++r++lt+GW+ Fv+a++L +gD+v+F   
  Gorai.008G097200.2 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPA-QELVARDLHENEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 215
                         99***********************9*****9777766.49************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++ +l+++++r+
  Gorai.008G097200.2 216 WNEKNQLLLGIRRA 229
                         8899999****997 PP
2Auxin_resp1201.8e-39254337183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Gorai.008G097200.2 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYyTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPGRWPNSHWRSVK 337
                         79*********************************989*******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-47113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-41121243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-21127228No hitNo description
PfamPF023621.5E-21128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506128230IPR003340B3 DNA binding domain
SMARTSM010191.9E-24128230IPR003340B3 DNA binding domain
PfamPF065075.4E-34254337IPR010525Auxin response factor
SuperFamilySSF542779.16E-7772850No hitNo description
PfamPF023091.4E-5772858IPR033389AUX/IAA domain
PROSITE profilePS5174522.027776860IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MRLSSSGFNQ QTEEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKNV FLLPAELGTP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS LQPPAQELVA RDLHENEWKF  180
RHVFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYY TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPGRWPN SHWRSVKVGW DESTAGEKQP RVSLWEIEPL  360
TTFPMYSSPF PLRLKRPWPS ALPSFHAFKD GDMNINSQMM WLQGGIGDQG LQSLNFQGFG  420
VAPWMQPRLD TSSIQGVQPD LYQAMAAAAF QEMRTVDSSK LGSQSLLQFQ QPQSMSNGSP  480
AIIQRQMLQQ SQTQNAFLQG FQENQTTSQV QLLQQLQRSN SYNNHRQQQQ QQQQQQRQQQ  540
QQQQQSQQMQ QIPQFSDQQQ ISNLIPAFPK ASGSQAQSSS LPTAASECQQ PTFSDPLGNS  600
LAISNASSMQ SILGSLSHAG ASHLHNLKGS NPIVSSSLLS KPVAIEPQLS SETANYILPQ  660
VEHLGMVQSN VLSNVLPPFP GREYSAYQSS TDTQNNFLFG VSIDSSSLVL QHGMTNLKNI  720
GNENDSLSLP YAASNFTSAS GTDFPLNSDM TTSSCVDESG YLQSSEYVDQ VNPPTGTFVK  780
VHKLGSFGRS LDISKFSSYN ELRCELARMF GLEGQLEDPQ RSGWQLVFVD RENDILLLGD  840
DPWQEFVNNV WYIKILSPLE VQQMGKEGLN PAASDPSQTR HQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1661635847388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.14480.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488001620.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437325.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0D2U0G10.0A0A0D2U0G1_GOSRA; Auxin response factor
STRINGGorai.008G097200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]