PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G091800.1 | ||||||||
Common Name | B456_008G091800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CAMTA | ||||||||
Protein Properties | Length: 183aa MW: 21041.7 Da PI: 5.9443 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 111.1 | 6.5e-35 | 2 | 80 | 34 | 118 |
CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 pksg+++L+nrk++r+f+kD y+wkkkkdgkt++E+he+LK+ ++yYa +e+n+tf rrcywlL+++le+ivlvhy+e+k Gorai.008G091800.1 2 PKSGTIVLFNRKMLRNFQKDDYNWKKKKDGKTIKEAHEHLKI------HVYYALGEDNSTFVRRCYWLLDKSLEQIVLVHYRETK 80 9****************************************6......79********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 46.852 | 1 | 85 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.9E-27 | 1 | 80 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.3E-29 | 2 | 78 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MPKSGTIVLF NRKMLRNFQK DDYNWKKKKD GKTIKEAHEH LKIHVYYALG EDNSTFVRRC 60 YWLLDKSLEQ IVLVHYRETK EVSLATHSNL SLLTYQSTPL LVTEEFDSGI ANTYSEELGE 120 SVNVRNHEMK LLEINTLEWD ELLVANGAID SIASRGDNVS CFDQQNQMAV NDFSNYVSRT 180 IS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, sepals, petals, stamen filaments, top of carpels, anthers and siliques, but not in stigmas. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012459975.1 | 1e-111 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 | ||||
Swissprot | Q9LSP8 | 6e-50 | CMTA6_ARATH; Calmodulin-binding transcription activator 6 | ||||
TrEMBL | A0A0D2SXL9 | 1e-133 | A0A0D2SXL9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G091800.1 | 1e-134 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16940.1 | 3e-54 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G091800.1 |
Publications ? help Back to Top | |||
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