PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 289aa MW: 32466.9 Da PI: 4.4348

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G091100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.7e-19	20	73	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Gorai.008G091100.2 20 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 73 566899***********************************************9 PP
2	HD-ZIP_I/II	127.1	7.5e-41	19	111	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy Lk++y++lk + ++L++ +e+L +e+ Gorai.008G091100.2 19 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKTSYETLKLNFDTLQHGNEALLKEI 109 69*************************************************************************************9999 PP HD-ZIP_I/II 92 ke 93 +e Gorai.008G091100.2 110 RE 111 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.346	15	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-19	16	77	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-17	18	79	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-16	20	73	IPR001356	Homeobox domain
CDD	cd00086	1.93E-16	20	76	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.1E-20	22	81	IPR009057	Homeodomain-like
PRINTS	PR00031	7.6E-6	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.6E-6	55	71	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.2E-15	75	116	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0030308	Biological Process	negative regulation of cell growth
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048573	Biological Process	photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MLDGLEEEGC LEEAGHVAEK KRRLSVDQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ 60 VAVWFQNRRA RWKTKQLERD YGLLKTSYET LKLNFDTLQH GNEALLKEIR ELKAKLNGES 120 VGSNLSVKEE AILPETDEKT MEQSEPLPAS SLATSSEPIE LNYECFNSSN NRVADAILFP 180 ELKDGSSDSD SSAILNEDDH TNTNNGVVSS SGVLQSQHLL MSPTTTSSFN FDSSSSSSPS 240 SMNCFQFSKT TYLVKMEEHN FFTADEACNF FSDEQAPSLQ WCYPEQWN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	75	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2833	1e-114	flower\|seedling\| flowering

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00051	PBM	Transfer from AT4G40060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527086	3e-61	HQ527086.1 Gossypium herbaceum clone NBRI_D2_391 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437230.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A0D2T2X3	0.0	A0A0D2T2X3_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2TZX4	0.0	A0A0D2TZX4_GOSRA; Uncharacterized protein
STRING	Gorai.008G091100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	4e-64	homeobox protein 16

Link Out ? help Back to Top
Phytozome	Gorai.008G091100.2
Entrez Gene	105763539

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]