PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 327aa MW: 36714.7 Da PI: 4.4915

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G091100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.8e-19	58	111	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Gorai.008G091100.1 58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111 566899***********************************************9 PP
2	HD-ZIP_I/II	126.8	9.5e-41	57	149	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy Lk++y++lk + ++L++ +e+L +e+ Gorai.008G091100.1 57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKTSYETLKLNFDTLQHGNEALLKEI 147 69*************************************************************************************9999 PP HD-ZIP_I/II 92 ke 93 +e Gorai.008G091100.1 148 RE 149 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.06E-19	49	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.346	53	113	IPR001356	Homeobox domain
SMART	SM00389	1.1E-17	56	117	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	58	111	IPR001356	Homeobox domain
CDD	cd00086	1.73E-16	58	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-19	60	119	IPR009057	Homeodomain-like
PRINTS	PR00031	9.4E-6	84	93	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.4E-6	93	109	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.5E-15	113	154	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0030308	Biological Process	negative regulation of cell growth
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048573	Biological Process	photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MKRSLGCSDS MAAFMSICPT TDEESPRNNH IYSKELQSML DGLEEEGCLE EAGHVAEKKR 60 RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG 120 LLKTSYETLK LNFDTLQHGN EALLKEIREL KAKLNGESVG SNLSVKEEAI LPETDEKTME 180 QSEPLPASSL ATSSEPIELN YECFNSSNNR VADAILFPEL KDGSSDSDSS AILNEDDHTN 240 TNNGVVSSSG VLQSQHLLMS PTTTSSFNFD SSSSSSPSSM NCFQFSKTTY LVKMEEHNFF 300 TADEACNFFS DEQAPSLQWC YPEQWN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	113	RRARWKTKQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00051	PBM	Transfer from AT4G40060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527086	4e-61	HQ527086.1 Gossypium herbaceum clone NBRI_D2_391 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437230.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A0D2T2X3	0.0	A0A0D2T2X3_GOSRA; Uncharacterized protein
STRING	Gorai.008G091100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	2e-68	homeobox protein 16

Link Out ? help Back to Top
Phytozome	Gorai.008G091100.1
Entrez Gene	105763539

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]