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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G089900.2 | ||||||||
Common Name | B456_008G089900, LOC105763524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CAMTA | ||||||||
Protein Properties | Length: 1038aa MW: 117035 Da PI: 6.5151 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 144.7 | 2.5e-45 | 2 | 86 | 34 | 118 |
CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++fqrr+yw+Lee+l++ivlvhy++vk Gorai.008G089900.2 2 PPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQRRSYWMLEEDLSHIVLVHYRDVK 86 89********************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 66.041 | 1 | 91 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 7.7E-47 | 1 | 86 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.4E-38 | 2 | 85 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 5.0E-6 | 453 | 540 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 8.4E-19 | 454 | 540 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.5E-6 | 454 | 539 | IPR002909 | IPT domain |
CDD | cd00204 | 6.06E-12 | 638 | 747 | No hit | No description |
PROSITE profile | PS50297 | 16.52 | 638 | 749 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-14 | 639 | 750 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.2E-14 | 639 | 750 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.03 | 688 | 717 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.217 | 688 | 720 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1000 | 727 | 756 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 7.97E-9 | 858 | 913 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.016 | 862 | 884 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.297 | 864 | 892 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.002 | 864 | 883 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0039 | 885 | 907 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.578 | 886 | 910 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.1E-4 | 888 | 907 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1038 aa Download sequence Send to blast |
MPPSGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEENE 60 NFQRRSYWML EEDLSHIVLV HYRDVKGNRT NFNRLKETEG GIPYSQEAVG IVPNSEVESS 120 LSSNFLPNNS QIPSQTMDTA SMNSVHVQAS EYEDAESVSN HQASSQFHSF LDSHQPVAGR 180 ADTRFYDPYV HVSHSNNCYG KPSITAFQLT QTDKDREYNV AGITYEPQKN LDFTSWEDVL 240 ENCDRGVESA QYQPPFTLKQ NDTVGLLFDN SFLKKQAFED QSHAQEEWQG YEGDSSHIVK 300 WSLDQKLHPD LRYDLTSKFD EEVNHNLHPE KQHDHYLLNN QLTDPSKGDH EYVPKPDSEN 360 YLTLEGKSVY SSAMRPHLFD GSLAEGLKKL DSFNRWMSKE LGDVDESHTH SSSGAYWDEV 420 EGQNGIDVSS IPSQEQLDTF MLGPSLSHDQ LFSIIDFSPN WAYVGSEIKV LITGRFLKSQ 480 GHAENCKWSC MFGEVEVPAE VIADGVLRCH TPKHEAGRVP FYVTCSNRLA CSEVREFEYR 540 VSHILDIDTV DNPSSNAIKI LDMRFGRLLC LGSSSPASNT NSIADISQLS SKINSLLKED 600 VEEWDQMLAH NLEEDFFLEK LKEQLLKKLL KEKLRVWLLQ KIVEGGKGPS ILDKGGQGVI 660 HFASALGYDW ALEPTIVAGV SVNFRDVNGW NALHWAASSG RERTVASLIS LGAAPGALTD 720 PTPEYPLGRT PADLASANGH KGISGYLAEC DLSSHLLSLN LDKQGSASTT DSRPDVIQKI 780 LELKTAPLNY GDASDGPSLK DSLAAVRNAT QAAARIHQVF RVQSFQNRQL KEYGNDKYGM 840 SDERALSLLA VKSNKPGQHD ERVHAAAIRI QNKFRGWKGR KEFLIIRQRI VKIQAHVRGH 900 QVRKNYRKIV WSVGIVEKVI LRWRRKGSGL RGFKPETLTK GPSVSVPSKE DDYDFLKKGR 960 KQTEERLQKA LARVKSMALN PAGRDQYSRI KNVVTEIQEK VLYDKVLNFA GETTDLDKDL 1020 IDLEKLLDED TFMQTAP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00042 | PBM | Transfer from AT2G22300 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM434540 | 6e-38 | AM434540.2 Vitis vinifera contig VV78X210461.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437207.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 3 isoform X1 | ||||
Swissprot | Q8GSA7 | 0.0 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | A0A0D2RC84 | 0.0 | A0A0D2RC84_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G089900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G089900.2 |
Entrez Gene | 105763524 |