PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G089900.2

Common Name

B456_008G089900, LOC105763524

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 1038aa MW: 117035 Da PI: 6.5151

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G089900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	144.7	2.5e-45	2	86	34	118
CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++fqrr+yw+Lee+l++ivlvhy++vk Gorai.008G089900.2 2 PPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQRRSYWMLEEDLSHIVLVHYRDVK 86 89********************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	66.041	1	91	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.7E-47	1	86	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-38	2	85	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.0E-6	453	540	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	8.4E-19	454	540	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.5E-6	454	539	IPR002909	IPT domain
CDD	cd00204	6.06E-12	638	747	No hit	No description
PROSITE profile	PS50297	16.52	638	749	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.71E-14	639	750	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.2E-14	639	750	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.03	688	717	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.217	688	720	IPR002110	Ankyrin repeat
SMART	SM00248	1000	727	756	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	7.97E-9	858	913	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.016	862	884	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.297	864	892	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.002	864	883	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0039	885	907	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.578	886	910	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.1E-4	888	907	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1038 aa Download sequence Send to blast
MPPSGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEENE 60 NFQRRSYWML EEDLSHIVLV HYRDVKGNRT NFNRLKETEG GIPYSQEAVG IVPNSEVESS 120 LSSNFLPNNS QIPSQTMDTA SMNSVHVQAS EYEDAESVSN HQASSQFHSF LDSHQPVAGR 180 ADTRFYDPYV HVSHSNNCYG KPSITAFQLT QTDKDREYNV AGITYEPQKN LDFTSWEDVL 240 ENCDRGVESA QYQPPFTLKQ NDTVGLLFDN SFLKKQAFED QSHAQEEWQG YEGDSSHIVK 300 WSLDQKLHPD LRYDLTSKFD EEVNHNLHPE KQHDHYLLNN QLTDPSKGDH EYVPKPDSEN 360 YLTLEGKSVY SSAMRPHLFD GSLAEGLKKL DSFNRWMSKE LGDVDESHTH SSSGAYWDEV 420 EGQNGIDVSS IPSQEQLDTF MLGPSLSHDQ LFSIIDFSPN WAYVGSEIKV LITGRFLKSQ 480 GHAENCKWSC MFGEVEVPAE VIADGVLRCH TPKHEAGRVP FYVTCSNRLA CSEVREFEYR 540 VSHILDIDTV DNPSSNAIKI LDMRFGRLLC LGSSSPASNT NSIADISQLS SKINSLLKED 600 VEEWDQMLAH NLEEDFFLEK LKEQLLKKLL KEKLRVWLLQ KIVEGGKGPS ILDKGGQGVI 660 HFASALGYDW ALEPTIVAGV SVNFRDVNGW NALHWAASSG RERTVASLIS LGAAPGALTD 720 PTPEYPLGRT PADLASANGH KGISGYLAEC DLSSHLLSLN LDKQGSASTT DSRPDVIQKI 780 LELKTAPLNY GDASDGPSLK DSLAAVRNAT QAAARIHQVF RVQSFQNRQL KEYGNDKYGM 840 SDERALSLLA VKSNKPGQHD ERVHAAAIRI QNKFRGWKGR KEFLIIRQRI VKIQAHVRGH 900 QVRKNYRKIV WSVGIVEKVI LRWRRKGSGL RGFKPETLTK GPSVSVPSKE DDYDFLKKGR 960 KQTEERLQKA LARVKSMALN PAGRDQYSRI KNVVTEIQEK VLYDKVLNFA GETTDLDKDL 1020 IDLEKLLDED TFMQTAP*

Sequence ? help Back to Top

Protein Sequence Length: 1038 aa Download sequence Send to blast

MPPSGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEENE  60
NFQRRSYWML EEDLSHIVLV HYRDVKGNRT NFNRLKETEG GIPYSQEAVG IVPNSEVESS  120
LSSNFLPNNS QIPSQTMDTA SMNSVHVQAS EYEDAESVSN HQASSQFHSF LDSHQPVAGR  180
ADTRFYDPYV HVSHSNNCYG KPSITAFQLT QTDKDREYNV AGITYEPQKN LDFTSWEDVL  240
ENCDRGVESA QYQPPFTLKQ NDTVGLLFDN SFLKKQAFED QSHAQEEWQG YEGDSSHIVK  300
WSLDQKLHPD LRYDLTSKFD EEVNHNLHPE KQHDHYLLNN QLTDPSKGDH EYVPKPDSEN  360
YLTLEGKSVY SSAMRPHLFD GSLAEGLKKL DSFNRWMSKE LGDVDESHTH SSSGAYWDEV  420
EGQNGIDVSS IPSQEQLDTF MLGPSLSHDQ LFSIIDFSPN WAYVGSEIKV LITGRFLKSQ  480
GHAENCKWSC MFGEVEVPAE VIADGVLRCH TPKHEAGRVP FYVTCSNRLA CSEVREFEYR  540
VSHILDIDTV DNPSSNAIKI LDMRFGRLLC LGSSSPASNT NSIADISQLS SKINSLLKED  600
VEEWDQMLAH NLEEDFFLEK LKEQLLKKLL KEKLRVWLLQ KIVEGGKGPS ILDKGGQGVI  660
HFASALGYDW ALEPTIVAGV SVNFRDVNGW NALHWAASSG RERTVASLIS LGAAPGALTD  720
PTPEYPLGRT PADLASANGH KGISGYLAEC DLSSHLLSLN LDKQGSASTT DSRPDVIQKI  780
LELKTAPLNY GDASDGPSLK DSLAAVRNAT QAAARIHQVF RVQSFQNRQL KEYGNDKYGM  840
SDERALSLLA VKSNKPGQHD ERVHAAAIRI QNKFRGWKGR KEFLIIRQRI VKIQAHVRGH  900
QVRKNYRKIV WSVGIVEKVI LRWRRKGSGL RGFKPETLTK GPSVSVPSKE DDYDFLKKGR  960
KQTEERLQKA LARVKSMALN PAGRDQYSRI KNVVTEIQEK VLYDKVLNFA GETTDLDKDL  1020
IDLEKLLDED TFMQTAP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM434540	6e-38	AM434540.2 Vitis vinifera contig VV78X210461.8, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437207.1	0.0	PREDICTED: calmodulin-binding transcription activator 3 isoform X1
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A0D2RC84	0.0	A0A0D2RC84_GOSRA; Uncharacterized protein
STRING	Gorai.008G089900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Gorai.008G089900.2
Entrez Gene	105763524

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]