PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.008G087600.2 | ||||||||
Common Name | B456_008G087600, LOC105763496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 301aa MW: 34164.6 Da PI: 6.4251 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 3e-12 | 122 | 168 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L l+P + kK +Ka+iL A+ Y+k+Lq Gorai.008G087600.2 122 DHVLAERKRREKLSQSFISLSALIPGL-----KKTDKASILGDAITYLKKLQ 168 58899**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.951 | 118 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-16 | 122 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-16 | 123 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-12 | 123 | 171 | No hit | No description |
Pfam | PF00010 | 1.1E-9 | 123 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-13 | 124 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MEDPTLFPQY QMINPIDYSF HDFNFHSENY SSNPYYTIGN SFIETSQEVD DFKRQMKQLK 60 TNSWNSCITE NNIPPPPKPS SSSSSSHLIS FDNSNSYYAV DYDVKPKNEV GSFTRIPLHA 120 QDHVLAERKR REKLSQSFIS LSALIPGLKK TDKASILGDA ITYLKKLQDR VNVLEEQVAK 180 KTMESVIFVR KTQIYADDET SSSDESVHGQ SNNNPFPEIE ARVSDKDVLI RIHCKNNKGC 240 ISNIINEVEK LHLFVLNSHV LPFGQATLDI TITAQMEAEF SMTVKDLVKS LRLALLKFIM 300 * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 126 | 131 | ERKRRE |
2 | 127 | 132 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437188.1 | 0.0 | PREDICTED: transcription factor bHLH19-like | ||||
TrEMBL | A0A0D2PRC4 | 0.0 | A0A0D2PRC4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G087600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22760.1 | 4e-64 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.008G087600.2 |
Entrez Gene | 105763496 |
Publications ? help Back to Top | |||
---|---|---|---|
|