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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.008G081100.1 |
Common Name | B456_008G081100, LOC105763420 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
LBD |
Protein Properties |
Length: 233aa MW: 25347 Da PI: 8.2088 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.008G081100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 98 | 9.5e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++
Gorai.008G081100.1 2 SCNGCRVLRKGCSESCILRPCLqwidsPEAQGHATIFVAKFFGRAGLMSFISAVPESQRSVLFQSLLFEACGRTVNPVNGAVGLLWTGNWH 92
6****************************************************************************************** PP
DUF260 87 leqlkaelall 97
++q+++e++l+
Gorai.008G081100.1 93 VCQAAVETVLR 103
*****998875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSESCILR PCLQWIDSPE AQGHATIFVA KFFGRAGLMS FISAVPESQR 60 SVLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTVLAV PELMAPTPAS 120 GEKSEATKIT CMLKLQETET KFNSTCRFST SRSKVSPKRI KVEEFSKFQP SDLDLCLTPS 180 STGNRLPDNR RPGTPSLNSE ESVTTTCFES GFADQQRQGG ETDRIKLLNL FV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |