PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G073300.1
Common NameB456_008G073300, LOC105763342
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 367aa    MW: 40939 Da    PI: 6.7776
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G073300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.94.5e-33230285156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+peLH+rFvea++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Gorai.008G073300.1 230 KQRRCWSPELHRRFVEALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 285
                         79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.019227287IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-30227288IPR009057Homeodomain-like
SuperFamilySSF466895.38E-19228288IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-27230285IPR006447Myb domain, plants
PfamPF002492.5E-8232283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MELSLDLSLV YVPKTISEFL KEVSKIKNGF QRLAKITDYL QRLEDEMKKI DAFKRELPLC  60
MLLLKDGIER LKEEEIQCKE MNDGSVTEEN GRETMDNDGG DKKNWMSSVQ LWNSNFNNVD  120
PHNKPNTVPE LKLTSEEGED GSESENPIEI CNKQRKGGAF VPFKEQADKK VSGLSLMTPS  180
SELASCILKN NGGCRIGSGS SLYAQQNQIK FQTKSQIRHE EQPQQQNSRK QRRCWSPELH  240
RRFVEALQQL GGSQVATPKQ IRELMQVDGL TNDEVKSHLQ KYRLHIRKLP ASSSGQGNEL  300
CSAQNQCNVK MKASMSQSGS PQGPLLGSAS AKDMSSTGGD SMDTEDEKSD GHSWRSGIKK  360
PGEVDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-15230283154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-15230283154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-15230283154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-15230283154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00629PBMTransfer from PK14402.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5803181e-125JX580318.1 Gossypium hirsutum clone NBRI_GE12725 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436995.10.0PREDICTED: uncharacterized protein LOC105763342
TrEMBLA0A0D2PQG90.0A0A0D2PQG9_GOSRA; Uncharacterized protein
STRINGGorai.008G073300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.12e-70G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]