PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G070800.1
Common NameB456_008G070800, LOC105763312
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 794aa    MW: 86316.6 Da    PI: 7.1135
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G070800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.5e-095595961954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps +++  LA+++gL+++qV++WF N R +
  Gorai.008G070800.1 559 FEHflHPYPSDADKLLLARQTGLSKNQVSNWFINARVR 596
                         554459******************************88 PP
2BELL121.24.4e-39419490172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +r e+q++k+kLls+l+eVd+rY++y+eq+qtv++sF+ v+g g+a pYt+lA ka+SrhF+cLkdai+ q+
  Gorai.008G070800.1 419 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQTVVNSFDLVMGFGAAVPYTALAKKAMSRHFKCLKDAITAQL 490
                         589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.1E-79350488IPR006563POX domain
PfamPF075261.1E-50355487IPR006563POX domain
PROSITE profilePS5007112.633537600IPR001356Homeobox domain
CDDcd000868.13E-13540601No hitNo description
SMARTSM003898.5E-10540604IPR001356Homeobox domain
SuperFamilySSF466891.33E-16542607IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27543606IPR009057Homeodomain-like
PfamPF059201.3E-17557596IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MGIATSPVTP SILHQIPFQE KSNHSTNSMS QDYHHQAAAG IFSFSNGFER SAMSHQEQHQ  60
QQQQQQHLVQ QIRRDKQRVQ GFEPPSLPLV GIESNALPVY EAEGMLSEMF NFPTGVAASA  120
ELLDQHVEPN YRAHRPPGNS NEWFSNRRGV VGGLGLVGES KSHDNRDTLA AQQQHQQLPS  180
FNADSAAAMN LFLMNPQPRS PSPPAPPSSS SNTLHILLPN PSTSLQGFNV SGPAGGTFRT  240
TSTVLSPPQF TWVPNSAHEG DDSGSQLNNS SQIGGVVEGQ GLSLSLSSSL QHLEAAKAEK  300
LRMYYNQEAG SSASAADQFH YKNLATHNHH HLQGGVGENH QVHVGFGSSL GMVNVLRNSK  360
YVKAAQELLE EFCSVGRGNF KRNKSCRNNT NPTFNPPGSN GDGGSSSSTK DPLPLSTADR  420
IEHQRRKVKL LSMLDEVDRR YNHYCEQMQT VVNSFDLVMG FGAAVPYTAL AKKAMSRHFK  480
CLKDAITAQL KHSCEALGEK DGAGNSGITK GETPRLRVLE QSLRQQRAFH QMGMVEQEAW  540
RPQRGLPERS VNTLRAWLFE HFLHPYPSDA DKLLLARQTG LSKNQVSNWF INARVRLWKP  600
MVEDMYQQEI KEEDEDNNEG HNSNSAQKST PSTTAGAAAS TPSEPPPTTA AAGGKRSEIN  660
AMENDPSLIA INRQDFSENQ AKQCTHHDTS ATNTTIIATG PPPPTTFKAT ATEVAPPFSY  720
GVDGTTTCRR GSIVSADYGT TTRPGNDSDI GSTLIRFGTT TGDVSLTLGL RHAGNMPENT  780
SSFSVRDVGG LLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-15546603158Homeobox protein Meis1
4xrs_B2e-15546603158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436959.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_012436960.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ9SW801e-159BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A0D2PQ980.0A0A0D2PQ98_GOSRA; Uncharacterized protein
STRINGGorai.008G070800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-157BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]