PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G068100.1
Common NameB456_008G068100, LOC105763284
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 615aa    MW: 67688.3 Da    PI: 5.1825
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G068100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.44.9e-1132476142374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          ++Ll+cA+ +s+++ e+a + L +l+e +s++gdp++R+a+yft+AL +r++       k l+  et+   s++ + ++k++++++P+ k
  Gorai.008G068100.1 247 LKALLDCAR-LSDSEPERAIKSLVELRESVSERGDPTERVAFYFTQALYSRVSL---PAEKRLNLLETT---SEDFTLSYKVLNDACPYSK 330
                         689*****9.677799999999*******************************9...677788888888...89999************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         f+hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p  g   + +l +tg+rL++fA+ l+++fef++
  Gorai.008G068100.1 331 FAHLTANQAILEATERATKIHIVDFGIVQGVQWAALLQALAARSAGKPtRIRISGIPAPVLGssPAPSLYATGNRLRDFAKLLDLNFEFEP 421
                         ********************************************77666*********998888999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          + + +++l+ + +rv+++E+laVn++lql++lld +  + +   + L l ksl+Pk+v++ e ea++n+  F++rf +al+yy+a+f+sl
  Gorai.008G068100.1 422 -ILTPIKELKESCFRVDNDEVLAVNFMLQLYNLLDATPVTVE---AALCLAKSLNPKIVTLGEYEASLNRVGFVNRFKNALRYYTAVFESL 508
                         .799******************************88777777...9********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv. 359
                         e +lpr+s er+ vEr+llg +i  ++ +e+ae rrer+e +e+W+  +e+aGF++v+ls++a +qak ll +++ s  y++ e++  ++ 
  Gorai.008G068100.1 509 EPNLPRDSPERVEVERQLLGGKIGAIIGAEEAEkRRERMEDKEQWKVLMESAGFETVSLSHYAISQAKILLWNYNySSSYSLIESKPGFLt 599
                         ***************************9999888*****************************************9999998877666555 PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         l Wk+ pL++vS+Wr
  Gorai.008G068100.1 600 LAWKEVPLLTVSSWR 614
                         **************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.395220592IPR005202Transcription factor GRAS
PfamPF035141.7E-110247614IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QQQQQEQQQE QHHHQQQQLL GVSHVTLNPW PNNPHHGVSN  60
SPILGYGLSG PGFTDLFQGD TGEGFQFPNM GHHHSSGFRF PDFGGGSGGE FDTDEWMDCL  120
MNSGDSTDSS NLPSGCEVWQ NNADFGLYGA DPFSACPNRL SVACPTPSDL NRVIFPTEAQ  180
KNLSPTLQPQ HQLPTWSPSP SPPPPPPPHV AVKETKASSP PSQTPLTNDA TGVSADSTKI  240
ESAPPLLKAL LDCARLSDSE PERAIKSLVE LRESVSERGD PTERVAFYFT QALYSRVSLP  300
AEKRLNLLET TSEDFTLSYK VLNDACPYSK FAHLTANQAI LEATERATKI HIVDFGIVQG  360
VQWAALLQAL AARSAGKPTR IRISGIPAPV LGSSPAPSLY ATGNRLRDFA KLLDLNFEFE  420
PILTPIKELK ESCFRVDNDE VLAVNFMLQL YNLLDATPVT VEAALCLAKS LNPKIVTLGE  480
YEASLNRVGF VNRFKNALRY YTAVFESLEP NLPRDSPERV EVERQLLGGK IGAIIGAEEA  540
EKRRERMEDK EQWKVLMESA GFETVSLSHY AISQAKILLW NYNYSSSYSL IESKPGFLTL  600
AWKEVPLLTV SSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1462456143375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436892.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_012436893.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0D2SW760.0A0A0D2SW76_GOSRA; Uncharacterized protein
STRINGGorai.008G068100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]