PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G067500.2

Common Name

B456_008G067500, LOC105763278

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 358aa MW: 39496.9 Da PI: 6.4037

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G067500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	190	237	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gorai.008G067500.2 190 SHSLAERARREKISKKMKCLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 237 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.41E-9	184	241	No hit	No description
SuperFamily	SSF47459	8.9E-17	184	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-18	186	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.237	186	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	190	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-10	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDVTVLDRQQ ATYPLELCAS SVPLFQSYLG SGPIVDLKRP EAYLGGDGFH EFVYFPVGGG 60 PEFGDSEKLN LVPPDAAPGY CISRTSSCQM TAFHAASMKE EREDMILEKM ESTTGSDSRE 120 SFTKRKAEVV ADHKSKDKRI KGEVEGESEV KTKCSTQVSR NSSKENSKAC EVQKPDYIHV 180 RARRGQATDS HSLAERARRE KISKKMKCLQ DLVPGCNKVT GKAGMLDEII NYVQSLQRQV 240 EFLSMKIAAL NSRVEFNVEN LPIKEFPAYV ANFPAAAKLP AMPNLTCFQL NPMQKEAVNC 300 MLNETMHPPL TATEGIASAS VSIPEQALSS STITLQPFST WNMDPQGLYN VYDMGFH*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDVTVLDRQQ ATYPLELCAS SVPLFQSYLG SGPIVDLKRP EAYLGGDGFH EFVYFPVGGG  60
PEFGDSEKLN LVPPDAAPGY CISRTSSCQM TAFHAASMKE EREDMILEKM ESTTGSDSRE  120
SFTKRKAEVV ADHKSKDKRI KGEVEGESEV KTKCSTQVSR NSSKENSKAC EVQKPDYIHV  180
RARRGQATDS HSLAERARRE KISKKMKCLQ DLVPGCNKVT GKAGMLDEII NYVQSLQRQV  240
EFLSMKIAAL NSRVEFNVEN LPIKEFPAYV ANFPAAAKLP AMPNLTCFQL NPMQKEAVNC  300
MLNETMHPPL TATEGIASAS VSIPEQALSS STITLQPFST WNMDPQGLYN VYDMGFH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436882.1	0.0	PREDICTED: transcription factor BEE 2-like isoform X2
TrEMBL	A0A0D2SW70	0.0	A0A0D2SW70_GOSRA; Uncharacterized protein
STRING	Gorai.008G067500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18300.2	1e-68	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G067500.2
Entrez Gene	105763278

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]