PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G067500.1 | ||||||||
Common Name | B456_008G067500, LOC105763278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 359aa MW: 39625.1 Da PI: 6.4037 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.3e-09 | 190 | 237 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gorai.008G067500.1 190 SHSLAERARREKISKKMKCLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 237 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.50E-9 | 184 | 241 | No hit | No description |
SuperFamily | SSF47459 | 8.9E-17 | 184 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-18 | 186 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.237 | 186 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 190 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-10 | 192 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MDVTVLDRQQ ATYPLELCAS SVPLFQSYLG SGPIVDLKRP EAYLGGDGFH EFVYFPVGGG 60 PEFGDSEKLN LVPPDAAPGY CISRTSSCQM TAFHAASMKE EREDMILEKM ESTTGSDSRE 120 SFTKRKAEVV ADHKSKDKRI KGEVEGESEV KTKCSTQVSR NSSKENSKAC EVQKPDYIHV 180 RARRGQATDS HSLAERARRE KISKKMKCLQ DLVPGCNKVT GKAGMLDEII NYVQSLQRQV 240 EFLSMKIAAL NSRVEFNVEN LPIKEFPAYV ANFPAAAKLP AMPNLTCFQL NPMQKEAVNC 300 MLNETMHPPL TATEGIASAS VSIPEQALSS STITQLQPFS TWNMDPQGLY NVYDMGFH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436881.1 | 0.0 | PREDICTED: transcription factor BEE 2-like isoform X1 | ||||
TrEMBL | A0A0D2RAW3 | 0.0 | A0A0D2RAW3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G067500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3406 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18300.2 | 2e-68 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G067500.1 |
Entrez Gene | 105763278 |
Publications ? help Back to Top | |||
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