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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.008G060100.1 |
Common Name | B456_008G060100 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MYB |
Protein Properties |
Length: 377aa MW: 42606.7 Da PI: 7.4394 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.008G060100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 43.6 | 6.7e-14 | 81 | 128 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ + G +W+++++ g+ R++k+c++rw +yl
Gorai.008G060100.1 81 KGPWTAEEDKKLISFILTNGQFCWRAVPKLAGLLRCGKSCRLRWTNYL 128
79******************99**********99************97 PP
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2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 138 | 178 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++ E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++
Gorai.008G060100.1 138 SEYEEQMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 178
6779**************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 377 aa
Download sequence Send
to blast |
MKVGACVCAL LLSVHQTSKR VPVSCSCFIS WINCFVLIIS FHFLDKVLIF LRNPLFDKTL 60 VFNIRIKMGR QPCCEKVGLK KGPWTAEEDK KLISFILTNG QFCWRAVPKL AGLLRCGKSC 120 RLRWTNYLRP DLKRGLLSEY EEQMVIDLHA QLGNRWSKIA SHLPGRTDNE IKNHWNTHIK 180 KKLRKMGIDP LTHKPLSTAE EQPKEQKKQV PKVDKSKPPE TSLQSTITKA KEEDTSMTSS 240 SFDPMDMTMN NENIDGFCTD EVPLIEPHEI LIPGPAAPST SSSSSSSSSS SSAHSPNFLQ 300 QFHYFPADFE WPSVNNTNKT DSNNLSLWDT DDFSGWDLLI NDDDSDTKLA LDSLSSPLFQ 360 CLRMGFDQDS WTYPLL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |