PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G060100.1
Common NameB456_008G060100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 377aa    MW: 42606.7 Da    PI: 7.4394
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G060100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.7e-1481128148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd++l+  +   G  +W+++++  g+ R++k+c++rw +yl
  Gorai.008G060100.1  81 KGPWTAEEDKKLISFILTNGQFCWRAVPKLAGLLRCGKSCRLRWTNYL 128
                         79******************99**********99************97 PP
2Myb_DNA-binding51.22.9e-16138178547
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Gorai.008G060100.1 138 SEYEEQMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 178
                         6779**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-2072130IPR009057Homeodomain-like
PROSITE profilePS5129413.44976128IPR017930Myb domain
SuperFamilySSF466891.76E-2678175IPR009057Homeodomain-like
SMARTSM007177.2E-1280130IPR001005SANT/Myb domain
PfamPF002494.4E-1381128IPR001005SANT/Myb domain
CDDcd001672.04E-883128No hitNo description
PROSITE profilePS5129426.341129183IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-24131183IPR009057Homeodomain-like
SMARTSM007172.5E-14133181IPR001005SANT/Myb domain
PfamPF002495.5E-14138178IPR001005SANT/Myb domain
CDDcd001674.31E-11141179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKVGACVCAL LLSVHQTSKR VPVSCSCFIS WINCFVLIIS FHFLDKVLIF LRNPLFDKTL  60
VFNIRIKMGR QPCCEKVGLK KGPWTAEEDK KLISFILTNG QFCWRAVPKL AGLLRCGKSC  120
RLRWTNYLRP DLKRGLLSEY EEQMVIDLHA QLGNRWSKIA SHLPGRTDNE IKNHWNTHIK  180
KKLRKMGIDP LTHKPLSTAE EQPKEQKKQV PKVDKSKPPE TSLQSTITKA KEEDTSMTSS  240
SFDPMDMTMN NENIDGFCTD EVPLIEPHEI LIPGPAAPST SSSSSSSSSS SSAHSPNFLQ  300
QFHYFPADFE WPSVNNTNKT DSNNLSLWDT DDFSGWDLLI NDDDSDTKLA LDSLSSPLFQ  360
CLRMGFDQDS WTYPLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28791835108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958311e-124BT095831.1 Soybean clone JCVI-FLGm-19P8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436774.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U71e-97MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A0D2RAD80.0A0A0D2RAD8_GOSRA; Uncharacterized protein
STRINGGorai.008G060100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.18e-99myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]