PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G058900.1
Common NameB456_008G058900, LOC105763178
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GeBP
Protein Properties Length: 274aa    MW: 31152.7 Da    PI: 10.3165
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G058900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57376.15.8e-2457149297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         +fqr+wse Dei +Lq+l+     +  s  +d+  fy+ +++s+s  ++ksql+eK+rrL+kKf+  +++ ++g +ps  + hd+  f+ls
  Gorai.008G058900.1  57 KFQRIWSEPDEIRFLQALLRS---HHLSFPKDLPLFYSSFSHSMSQPYTKSQLSEKLRRLRKKFRVVSSRLARGLNPSSLSLHDRALFDLS 144
                         79*****************87...5567788************************************************************ PP

              DUF573  93 kkiWg 97 
                         k++W 
  Gorai.008G058900.1 145 KRLWS 149
                         ****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.3E-2758149IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDSSQPHPSK PSASKLPIKR KSPHHPQFFT PKLEYQPIIL PPPKPKPKPQ PQTPPFKFQR  60
IWSEPDEIRF LQALLRSHHL SFPKDLPLFY SSFSHSMSQP YTKSQLSEKL RRLRKKFRVV  120
SSRLARGLNP SSLSLHDRAL FDLSKRLWSP EFASSSPFGK NSSGFNGVAG NGFDDCDTID  180
DDGEVKINGV SLHYDFAAGR DEVISGETID GVLAKSVLNA FDECIKEVRV MFMKQGVVCM  240
DTTERKWKEQ RVSEFDVLGR RLRLVIENSL TRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5780580.0JX578058.1 Gossypium hirsutum clone NBRI_GE9999 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436763.10.0PREDICTED: sorbin and SH3 domain-containing protein 2-like
TrEMBLA0A0D2SVN70.0A0A0D2SVN7_GOSRA; Uncharacterized protein
STRINGGorai.008G058900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1804289
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]