PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G058900.1

Common Name

B456_008G058900, LOC105763178

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 274aa MW: 31152.7 Da PI: 10.3165

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G058900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	76.1	5.8e-24	57	149	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 +fqr+wse Dei +Lq+l+ + s +d+ fy+ +++s+s ++ksql+eK+rrL+kKf+ +++ ++g +ps + hd+ f+ls Gorai.008G058900.1 57 KFQRIWSEPDEIRFLQALLRS---HHLSFPKDLPLFYSSFSHSMSQPYTKSQLSEKLRRLRKKFRVVSSRLARGLNPSSLSLHDRALFDLS 144 79***************87...5567788******************************************************** PP DUF573 93 kkiWg 97 k++W Gorai.008G058900.1 145 KRLWS 149 **7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.3E-27	58	149	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDSSQPHPSK PSASKLPIKR KSPHHPQFFT PKLEYQPIIL PPPKPKPKPQ PQTPPFKFQR 60 IWSEPDEIRF LQALLRSHHL SFPKDLPLFY SSFSHSMSQP YTKSQLSEKL RRLRKKFRVV 120 SSRLARGLNP SSLSLHDRAL FDLSKRLWSP EFASSSPFGK NSSGFNGVAG NGFDDCDTID 180 DDGEVKINGV SLHYDFAAGR DEVISGETID GVLAKSVLNA FDECIKEVRV MFMKQGVVCM 240 DTTERKWKEQ RVSEFDVLGR RLRLVIENSL TRR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578058	0.0	JX578058.1 Gossypium hirsutum clone NBRI_GE9999 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436763.1	0.0	PREDICTED: sorbin and SH3 domain-containing protein 2-like
TrEMBL	A0A0D2SVN7	0.0	A0A0D2SVN7_GOSRA; Uncharacterized protein
STRING	Gorai.008G058900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18042	8	9

Link Out ? help Back to Top
Phytozome	Gorai.008G058900.1
Entrez Gene	105763178

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]