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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G057200.1 | ||||||||
Common Name | B456_008G057200, LOC105763159 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 254aa MW: 29368.8 Da PI: 9.8386 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47 | 3.2e-15 | 9 | 50 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k ien+ r+ f kRr +lKKA+ELS+LCd++ ++ii+ + Gorai.008G057200.1 9 KLIENEKARKRVFEKRRSNLLKKAKELSILCDIKLLLIIYEH 50 569************************************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.021 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.7E-17 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-19 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.77E-18 | 2 | 59 | No hit | No description |
PRINTS | PR00404 | 4.7E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-14 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGKRRTEMKL IENEKARKRV FEKRRSNLLK KAKELSILCD IKLLLIIYEH GKEKAEIWPH 60 NNVEAEQIIE WFKQRRIDKT ACDSSASKRR RFGDKFDISD HKNMINHYSE NQLRNLIFEL 120 DAKIAAVMNV NQSKQVLKGV PGSPKNKGKG KEAVIYQEPI ETPQHQSFQT YWPKKNFISY 180 PEYENSSNIP YVPLPVHYVD PSSVQPPYKN ANSSMGYYGP NVNPVLPCIY YPMMPGFPPQ 240 MNASDLGFFP PFN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX577574 | 2e-53 | JX577574.1 Gossypium hirsutum clone NBRI_GE9426 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436735.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER C-like | ||||
Refseq | XP_012436736.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER C-like | ||||
Refseq | XP_012436737.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER C-like | ||||
TrEMBL | A0A0D2T134 | 0.0 | A0A0D2T134_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G057200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22172 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 1e-12 | AGAMOUS-like 18 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G057200.1 |
Entrez Gene | 105763159 |
Publications ? help Back to Top | |||
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